EY702791

Overview
NameEY702791
Unique NameEY702791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:1..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.511e-48
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 2
Query:  545 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN RLAMFSMFGFFVQAIVTG+GPLEN   H+ADPVN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          

HSP 2 Score: 22.3274 bits (46), Expect = 1.511e-48
Identity = 8/15 (53.33%), Postives = 9/15 (60.00%), Query Frame = 1
Query:  841 PCQYNAWAYATTLSP 885
            P   NAWA+AT   P
Sbjct:  251 PVNNNAWAFATNFVP 265          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.511e-48
Identity = 93/102 (91.18%), Postives = 97/102 (95.10%), Query Frame = 2
Query:  545 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN RLAMFSMFGFFVQAIVTG+GPLEN   H+ADPVN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          

HSP 2 Score: 22.3274 bits (46), Expect = 1.511e-48
Identity = 8/15 (53.33%), Postives = 9/15 (60.00%), Query Frame = 1
Query:  841 PCQYNAWAYATTLSP 885
            P   NAWA+AT   P
Sbjct:  251 PVNNNAWAFATNFVP 265          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.589e-48
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 2
Query:  545 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN RLAMFSMFGFFVQAIVTG+GPLEN   HLADPVN
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.589e-48
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 2
Query:  545 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN RLAMFSMFGFFVQAIVTG+GPLEN   HLADPVN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.589e-48
Identity = 94/102 (92.16%), Postives = 97/102 (95.10%), Query Frame = 2
Query:  545 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKN RLAMFSMFGFFVQAIVTG+GPLEN   HLADPVN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.537e-46
Identity = 93/110 (84.55%), Postives = 97/110 (88.18%), Query Frame = 2
Query:  524 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPEAFAELKVKEIKN RLAMFSMFGFFVQAIVTG+GPLEN   HLADPVN
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.216e-33
Identity = 72/103 (69.90%), Postives = 80/103 (77.67%), Query Frame = 2
Query:  545 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADP 844
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKN RLAM  M GF+ QAIVTG+GP+ENW  HL DP
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.932e-31
Identity = 92/239 (38.49%), Postives = 119/239 (49.79%), Query Frame = 2
Query:  137 VGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFV-QAIVTGQGPLENWXRHLADP 844
            VG    LAPS     +G       T S  V+  + W+            G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKN RLAM +  GF V Q+   G GPLEN   HLADP
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEWF-----------PGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADP 228          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.707e-31
Identity = 78/192 (40.62%), Postives = 105/192 (54.69%), Query Frame = 2
Query:  290 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADP 844
            PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKN RLAM ++ G + Q I TG GP++N   HLADP
Sbjct:   74 PPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.951e-30
Identity = 84/218 (38.53%), Postives = 112/218 (51.38%), Query Frame = 2
Query:  212 GSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADP 844
            GS+SV+  +    PDR  +       PP +L G  PGD+G+D  GL +DPE+   N + E++H RWAMLGA G   PE L + GV      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKN RLAM ++ G + Q I TG GP++N   HLADP
Sbjct:   50 GSRSVAVSAVAADPDRPLWFP--GSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQEY------FTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of EY702791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB2F_SOLLC1.511e-4891.18Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.511e-4891.18Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC1.589e-4892.16Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.589e-4892.16Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.589e-4892.16Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB21_RAPSA2.537e-4684.55Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_EUGGR3.216e-3369.90Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB121_HORVU3.932e-3138.49Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_SOLLC6.707e-3140.63Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB12_PETHY1.951e-3038.53Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702791 ID=EY702791; Name=EY702791; organism=Citrus sinensis; type=EST; length=923bp
CATCTGTCATCCTTTTAACTTNCCGGAATTCTTCAACAACCCACGCGTCC
GCACAGCTTCTATCGCTTACCCAGCTTCTGCTTCTCAATTAAATTCCTCA
ATGGCAACCTCAACATTGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGT
GAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCA
TGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGC
CCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTA
CTTGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTT
CAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCAC
TGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTT
GGCCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAG
CTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTG
ATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGAT
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGCAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GGCAAGGACCGTTAGAGAACTGGGNCCGACACTTGGCTGACCCTGTCAAT
ACAATGCCTGGGCCTACGCCACCACTTTGTCCCCCGAAATGAGCTTCGGT
TGATAAGAGTTTTTCTCTTTCTG
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