EY702791

Overview
NameEY702791
Unique NameEY702791
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9884 contig Csv1_Contig9884:1..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.549e-30
Identity = 83/192 (43.23%), Postives = 105/192 (54.69%), Query Frame = 2
Query:  278 LSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFV-QAIVTGQGPLENWXRHLADP 844
            + G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKN RLA+ ++ GF V Q+   G GPLEN   HLADP
Sbjct:   50 MPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADP 229          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.184e-27
Identity = 94/250 (37.60%), Postives = 126/250 (50.40%), Query Frame = 2
Query:  185 GGRISMRKTGSKSV---SSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            G RIS   T   S    ++ +P       + L   S +  SYL G  PGD+G+D  GLS DPE    F + + L   EVI+ R+AMLGA G + PE+L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R                     LG   DP YPGG  F+PLG   D ++  ELK+KEIKN RLAM ++ G+F+QA+VTG GP +N   HLADPVN
Sbjct:   24 GSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVN 263          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.916e-26
Identity = 83/210 (39.52%), Postives = 113/210 (53.81%), Query Frame = 2
Query:  296 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG----GPLGEVT------------DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            SYL G  PGDYG+D  GLS DPE    F + R L   EVI+ R+AMLGA+G + PE L + G+   E    WF+ G  I   G  +Y  +           ++  ++ LMG  E  R       G +G+              +P YPGG F +PLG   D ++  ELK+KE+KN RLAM ++ G+F+Q +VTG GP +N   H+ADPVN
Sbjct:   66 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVN 265          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.108e-25
Identity = 91/261 (34.87%), Postives = 121/261 (46.36%), Query Frame = 2
Query:  203 RKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVNT 853
            +K+  K+V++  P + P  +          P +L G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DPE  A+L++ EIK+ARLAM +  GF VQA  TG+GPL NW  HL+DP++T
Sbjct:   44 KKSAKKTVTTDRPLWYPGAIS---------PDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPLHT 281          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.380e-25
Identity = 91/257 (35.41%), Postives = 116/257 (45.14%), Query Frame = 2
Query:  215 SKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSF-DPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVNT 853
            +K+V S  P + P           + P YL G   GDYG+D  GL    E             AKN                                RE E+IH RWAML  LG +  E L   GV      W  AG     +G   YLG P      +++ I   +V+++G +E  R A     +    LYPGG F DPLGLA DP   A+L++ EIK+ARLAM    GF VQA  TG+GPL NW  HL+DP++T
Sbjct:   45 AKTVISDRPLWFP---------GAKSPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAGKVELVDGS-SYLGQPLPFSISTLIWI---EVLVIGYIEFQRNAEL---DSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPLHT 278          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23
Identity = 73/188 (38.83%), Postives = 97/188 (51.60%), Query Frame = 2
Query:  293 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADP 844
            P YLTG   GD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+  + G+      W+ AG  Q F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KE+ N RLAM +  GF VQ  VTG+GP EN  +HL+DP
Sbjct:   64 PDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPKGEVG---YPGGIFNPLNFAPTQEA----KEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 241          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.498e-22
Identity = 71/188 (37.77%), Postives = 97/188 (51.60%), Query Frame = 2
Query:  293 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG---YRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADP 844
            P YLTG  PGD G+D  GL+ DPE      + E+++ RWAMLG  G + PE+    G+      W+ AG  + F+     ++    L H   I   W   +   G+V     ++    P GEV    YPGG F+PL  A   EA    K KEI N RLAM +  GF +Q  VTG+GP +N  +H++DP
Sbjct:   63 PGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGI-INVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPAGEVG---YPGGIFNPLNFAPTLEA----KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDP 240          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: LH18_EUGGR (Light-harvesting complex I LH38 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.554e-22
Identity = 69/192 (35.94%), Postives = 96/192 (50.00%), Query Frame = 2
Query:  281 SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGG---PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPV 847
            + EPP+ LTGE+P D G+D   L+ADP+ +A+ R  EV H R AML  +GC+ PELL       G+  WF+AG  +                    L +    + +    E +R  GG     GE+ D  YPG  FDPL L  D       +  E+KN RLA+ ++ G   Q + TG+ PL N   HLA+P+
Sbjct:  193 NAEPPALLTGEYPADRGFDPLNLAADPDVYARMRVAEVFHGRLAMLCTVGCIVPELL-------GKGAWFEAGDSVDG------------------LKLGFITMAIAAPTEYWRGQGGFNWQKGEL-DRSYPG--FDPLNLTTD-----YTRAAEVKNGRLALTAVAGLTAQYLATGESPLANLSAHLANPI 351          

HSP 2 Score: 105.916 bits (263), Expect = 3.336e-22
Identity = 77/180 (42.78%), Postives = 96/180 (53.33%), Query Frame = 2
Query:  290 PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPL---GEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLEN 820
            PP YLTGE  GD G+D AGL+ADP TF + +  EV HCR +ML  +GC+ PELL       G   WF    QI+ +  +D+          +  A+ A QVV    +E +R  GG L    E  D  YPG  FDPL L  +       K  EIKN RLAM  MFG  VQ+ VTG+ P+ N
Sbjct:  380 PPRYLTGEAYGDKGFDPAGLAADPVTFERMQVAEVFHCRLSMLALVGCLVPELL-------GNGAWF----QIWDK--VDF----------NRFAVVALQVV--APLEYWRGNGGFLWNDEETVDQSYPG--FDPLNLTTE-----YTKEAEIKNGRLAMNGMFGLEVQSHVTGKSPINN 527          

HSP 3 Score: 96.2857 bits (238), Expect = 2.643e-19
Identity = 69/188 (36.70%), Postives = 93/188 (49.47%), Query Frame = 2
Query:  293 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-YRIAGGPLGEVTDP--LYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPV 847
            PS+L GE+ GD G+D AGL+ADP+TF + R  EV H R AML  +G + P+ L       G+ +W++A                          I   +V +  A  G + +A G + E +DP  +YPG  FDPL L  D       K  EIKN RLA+ ++ GF VQ  V G  PL N   HL  P+
Sbjct:   12 PSWLNGEYYGDRGFDPAGLAADPDTFERMRIAEVYHGRLAMLAVVGALVPDYL-------GKGIWYEAAQN---------------------AGIGLKEVAIFTAAYGVFEVARG-VKENSDPTTIYPG--FDPLNLTTD-----YTKEAEIKNGRLALTALLGFEVQRHVVGGSPLANLAEHLQQPL 163          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.923e-18
Identity = 76/221 (34.39%), Postives = 97/221 (43.89%), Query Frame = 2
Query:  290 PPSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN--------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLADDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPL 814
            PP +L G   GD G+D  GL    E             AKN                                RE E+IH RWAMLG LG +  E L   G+      W  AG     EG   YLG P      +++ I   +V+++G +E  R          DP   +YPGG FDPLGLA DPE    LK+ EIK++RLAM +   F +QA  TG+GP+
Sbjct:   65 PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTLIWI---EVLVVGYIEFQR------NSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPV 268          
BLAST of EY702791 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 3.231e-17
Identity = 91/267 (34.08%), Postives = 112/267 (41.95%), Query Frame = 2
Query:  209 TGSKSVSSGSPWYGPDRVKYLGPLSGEP----PSYLTGEFPGDYGWDTAGLSADPE-----------TFAKN----------------------------------RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---LYPGGSFDPLGLA-DDPEAFAELKVKEIKNARLAMFSMFGFFVQAIVTGQGPLENWXRHLADPVN 850
            T   + S+G+   G    KY G     P    P +L G  PGD G+D  GLS   E             AKN                                  RE E+IH RWAML  LG +  E  A  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR         T+P    YPGG FDPL LA +D E    LK  EIK+ARLAM S FG+ VQA+ TG+G L +  +  AD +N
Sbjct:   28 TKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGKVELD--GASYAG---LSLPFSITQLIWIEVILVGGAEFYR------NSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAK-FADGLN 275          
The following BLAST results are available for this feature:
BLAST of EY702791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB11_SOLLC2.549e-3043.23Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB13_SOLLC1.184e-2737.60Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.916e-2639.52Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4A_ARATH1.108e-2534.87Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH9.380e-2535.41Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB24_ARATH5.147e-2338.83Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.498e-2237.77Chlorophyll a-b binding protein P4, chloroplastic ... [more]
LH18_EUGGR2.554e-2235.94Light-harvesting complex I LH38 proteins (Fragment... [more]
CB4C_ARATH2.923e-1834.39Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE3.231e-1734.08Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702791 ID=EY702791; Name=EY702791; organism=Citrus sinensis; type=EST; length=923bp
CATCTGTCATCCTTTTAACTTNCCGGAATTCTTCAACAACCCACGCGTCC
GCACAGCTTCTATCGCTTACCCAGCTTCTGCTTCTCAATTAAATTCCTCA
ATGGCAACCTCAACATTGGCTCTCTCCTCATCATTCGTCGGCAAGGCCGT
GAACCTCGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCTCCA
TGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTACGGC
CCGGACAGAGTCAAGTACTTGGGCCCACTCTCTGGCGAGCCCCCAAGCTA
CTTGACTGGTGAGTTCCCTGGCGACTACGGTTGGGACACTGCCGGGCTTT
CAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATCCAC
TGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTT
GGCCCGCAACGGAGTCAAGTTCGGTGAGGCTGTGTGGTTCAAGGCGGGAG
CTCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGAAACCCAAGCTTG
ATCCACGCCCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTTGAT
GGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGA
CTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCTGAT
GACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGCAAG
GTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCG
GGCAAGGACCGTTAGAGAACTGGGNCCGACACTTGGCTGACCCTGTCAAT
ACAATGCCTGGGCCTACGCCACCACTTTGTCCCCCGAAATGAGCTTCGGT
TGATAAGAGTTTTTCTCTTTCTG
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