EG358336

Overview
NameEG358336
Unique NameEG358336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.333e-22
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFML+SYAPVISAEKA+HEQLSV E+TN VFEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLASYAPVISAEKAFHEQLSVAELTNTVFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAP+ISAEKAYHEQLSV EITN+ FEP++MMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_TETPY (Tubulin alpha chain OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAP+ISAEKAYHEQLSV EITN+ FEP++MMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPV+SAEKAYHEQLSV EITN+ FEP++MMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPV+SAEKAYHEQLSV EITN+ FEP++MMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKA+HEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.274e-22
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFML SYAPVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.274e-22
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFML SYAPVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLCSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.971e-22
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSY PVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYGPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKY 312
The following BLAST results are available for this feature:
BLAST of EG358336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBAN_PHYPO1.333e-2290.57Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA_TETTH1.741e-2288.68Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TETPY1.741e-2288.68Tubulin alpha chain OS=Tetrahymena pyriformis PE=3... [more]
TBA_PLAYO1.741e-2288.68Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBA_PLAFK1.741e-2288.68Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA6_ARATH1.741e-2290.57Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_ARATH1.741e-2290.57Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA1_NAEGR2.274e-2290.57Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=... [more]
TBA13_NAEGR2.274e-2290.57Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB... [more]
TBA_EUPVA2.971e-2290.57Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank description2c9 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0002c9, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358336 ID=EG358336; Name=EG358336; organism=Citrus sinensis; type=EST; length=495bp
TGTACCGTATCCTCGTATCCATTTCATGCTTTCATCATATGCCCCTGTCA
TCTCTGCTGAAAAAGCATACCATGAACAGCTTTCAGTTCCAGAGATCACA
AATGCAGTCTTTGAGCCCTCAAGCATGATGGCCAAATGTGACCCCAGGCA
CGGGAAGTACTCAAGACGAGCCAGTTGTCATGAACTCGCCGGATAACGGT
AATGGCAGCCAGCCACCACCAGCTCCTCCCCTCACTTCCAGAAATGATCC
TCATTTTCTTAGGAGATCTCAAAGGCAAACCCGCTCAAAGTATAGGAGTC
ATTCGCCAGCCACCCAAACCCCAACAGCCCCCAACGTCCGCAAACATAGA
CAATCAACTGCCAACCATCGAGCCACCATCACCTTCAAACCAAACCAAGT
CTTTATTACCATCTAGCCCGCAACGATCACAAGCCACACAAGACCAATCG
GGAGATGCACAACCAGCTGTCACAACCCTTATGCACCCCCCCCCG
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