DY306876

Overview
NameDY306876
Unique NameDY306876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1216
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_SULIY (V-type ATP synthase alpha chain OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.943e-13
Identity = 54/175 (30.86%), Postives = 86/175 (49.14%), Query Frame = -2
Query:  283 FPFVKLVYFYSSF-STALEFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDE 804
            +P +  +  +S++      ++    DP +  +R      L RED+L +IV+LVG ++LAE DK+ LETA+L++E +L QNA+   D F    K   +MR I  F   A++ VE+G       I    I   +G L   ++  K    A  +   + K+ +L   L   F  LE E
Sbjct:  426 YPAINWLQGFSAYVDLVANWWNTNVDPKWREMRDMMVRTLIREDELRQIVRLVGPESLAEKDKLVLETARLIKEAFLKQNAYDDIDAFSSPQKQARVMRLIYLFNTHASRLVERG-------IPTKKIVDSMGQLLPEIIRSK----AAIKNDELNKYDELERKLINVFENLEKE 589          

HSP 2 Score: 24.6386 bits (52), Expect = 1.943e-13
Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG F+ PVTS       VFW
Sbjct:  394 PGGDFTEPVTSQTLRFVKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_ANADF (V-type ATP synthase alpha chain OS=Anaeromyxobacter sp. (strain Fw109-5) GN=atpA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.206e-13
Identity = 52/159 (32.70%), Postives = 86/159 (54.09%), Query Frame = -2
Query:  307 SFSTALE----FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTA 771
            SFS   E    +F  +    F  +R +A ++LQRE +L E+ +LVG ++L + +++ LE+A+LLRE +L Q+A+ P D  CP  K++ M+R  +  +  A  A+  G  +      +++++  LG    RL S   E  A G  AL A+ + L   L A
Sbjct:  425 SFSLEAERLRGWFEREAGEGFGALRDEAMKLLQRERELVEVAELVGTESLQDAERLVLESARLLREGFLRQSAYDPVDASCPPRKALEMLRLHLELHGRAVNAIAGGVPL------HSILEAGLGARLLRLGSLPAEAIARGAEALRAELEGLLARLEA 577          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_HALSA (V-type ATP synthase alpha chain OS=Halobacterium salinarium GN=atpA PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.212e-12
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = -2
Query:  451 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 858
            L IV+ F+    +    + FP +     YS +   L+ +F +    D+   R  A ++L  E +L EIVQLVGKDAL E  ++TLE A+ +RE +L QNA    D++CP  K+  ++  I   +  + +A++ G  ++
Sbjct:  407 LRIVKTFWALDSDLAERRHFPAINWDESYSLYKDQLDPWFTDNVVDDWAEQRQWAVDILDEESELEEIVQLVGKDALPEDQQLTLEVARYIREAWLQQNALHDVDRYCPPEKTYAILSGIKTLHEESFEALDAGVPVE 544          

HSP 2 Score: 21.557 bits (44), Expect = 1.212e-12
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT         FW
Sbjct:  394 PGGDFSEPVTQNTLRIVKTFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_HALS3 (V-type ATP synthase alpha chain OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.212e-12
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = -2
Query:  451 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 858
            L IV+ F+    +    + FP +     YS +   L+ +F +    D+   R  A ++L  E +L EIVQLVGKDAL E  ++TLE A+ +RE +L QNA    D++CP  K+  ++  I   +  + +A++ G  ++
Sbjct:  407 LRIVKTFWALDSDLAERRHFPAINWDESYSLYKDQLDPWFTDNVVDDWAEQRQWAVDILDEESELEEIVQLVGKDALPEDQQLTLEVARYIREAWLQQNALHDVDRYCPPEKTYAILSGIKTLHEESFEALDAGVPVE 544          

HSP 2 Score: 21.557 bits (44), Expect = 1.212e-12
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT         FW
Sbjct:  394 PGGDFSEPVTQNTLRIVKTFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_NANEQ (V-type ATP synthase alpha chain OS=Nanoarchaeum equitans GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.655e-12
Identity = 36/116 (31.03%), Postives = 67/116 (57.76%), Query Frame = -2
Query:  466 EKPFPFVKLVYFYSSFSTALEFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEK 813
            ++ +P +  +  Y+     ++ ++E+   D I IR +   +L+RE +L +IV +VG DAL++ +KI L   +++RE +L Q+AF   D + P  K++ +MR I  +Y    Q + K
Sbjct:  411 KRHYPAINYLISYTKQWEFVKKYFEELYEDVIEIREEFFAILKRESELMDIVSIVGPDALSDNEKIYLHMGRIIREGFLQQDAFDENDSYSPLEKTIELMRIIHKYYVTVKQLLGK 526          

HSP 2 Score: 20.7866 bits (42), Expect = 2.655e-12
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = -1
Query:  869 PGGGFSVPVT 898
            PGG FS PVT
Sbjct:  382 PGGDFSEPVT 391          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CENSY (V-type ATP synthase alpha chain OS=Cenarchaeum symbiosum GN=atpA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.738e-12
Identity = 39/132 (29.55%), Postives = 75/132 (56.82%), Query Frame = -2
Query:  460 IVRFFGFGLETWAEKPFPFVKLVYFYSSFSTAL-EFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 852
            I  F+    +    + +P +  +  YS +   + +++ E    D+++ R++A  +LQRED L EIV+L+G +AL + +K+ LE A++++   L QN+F   D +C   K   +++  + FY    QA+++GA
Sbjct:  411 IKTFWALDAKLAYSRHYPSINWMNSYSGYLADIAKWWGENVSKDWLDTRSEAYGILQREDTLKEIVRLLGPEALPDEEKLILEVARMMKIGLLQQNSFDDVDTYCSPEKQYKLLKMQVDFYKRGQQALKEGA 542          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOBB (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=atpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.443e-12
Identity = 45/134 (33.58%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+G   +   ++ FP +  +  YS ++  ++ +       ++  +R +A  +LQ E  L EIV+LVG DAL+E D++ L+ AK +REDYL QN F   D +    K   M+  I+ +   A +A+E G
Sbjct:  406 LRIVKVFWGLDAQLAYQRHFPTINWLTSYSLYADTIDKWMNGNVAENWGALRLEAMTILQDEAQLQEIVRLVGIDALSEKDRLKLDVAKSIREDYLQQNGFHEIDTYTSLKKQYKMLNLILGYRKEAERALEAG 539          

HSP 2 Score: 20.4014 bits (41), Expect = 3.443e-12
Identity = 9/21 (42.86%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PV+ +      VFW
Sbjct:  393 PGGDISEPVSQSTLRIVKVFW 413          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_ANASK (V-type ATP synthase alpha chain OS=Anaeromyxobacter sp. (strain K) GN=atpA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.577e-12
Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = -2
Query:  283 FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDE 750
            +F  +    F  +R +AR++LQRE +L E+ +LVG ++L + +++ LE+A+LLRE +L Q+A  P D  CP  K+  M+R  + ++  A  AV  GAG+  + I  T     LG    RL     + PA   P   A    L  DL+     LE E
Sbjct:  437 WFEREAGDGFGALRDEARKLLQRERELAEVAELVGTESLQDAERLVLESARLLREGFLRQSALDPADATCPPAKAFEMLRLFLEWHRRAGAAV--GAGVPLRSILDT----GLGARLLRLA----QLPAAEVPGAAA---ALRADLSEALARLEAE 579          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_ANAD2 (V-type ATP synthase alpha chain OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=atpA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.577e-12
Identity = 54/156 (34.62%), Postives = 82/156 (52.56%), Query Frame = -2
Query:  283 FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALEDE 750
            +F  +    F  +R +AR++LQRE +L E+ +LVG ++L + +++ LE+A+LLRE +L Q+A  P D  CP  K+  M+R  + ++  A  AV  GAG+  + I  T     LG    RL     + PA   P   A    L  DL+     LE E
Sbjct:  437 WFEREAGDGFGALRDEARKLLQRERELAEVAELVGTESLQDAERLVLESARLLREGFLRQSALDPADATCPPAKAFEMLRLFLEWHRRAGAAV--GAGVPLRSILDT----GLGARLLRLA----QLPAAEVPGAAA---ALRADLSEALARLEAE 579          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOBA (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=atpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.470e-12
Identity = 45/134 (33.58%), Postives = 74/134 (55.22%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYE-QFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+G   +   ++ FP +  +  YS ++  ++ +       ++  +R +A  +LQ E  L EIV+LVG DAL+E D++ L+ AK +REDYL QN F   D +    K   M+  I+ +   A +A+E G
Sbjct:  406 LRIVKVFWGLDAQLAYQRHFPTINWLTSYSLYADTIDKWMNGNVAENWGALRLEAMTILQDEAQLQEIVRLVGIDALSEKDRLKLDVAKSIREDYLQQNGFHEIDTYTSLKKQYKMLSLILGYRKEAERALEAG 539          

HSP 2 Score: 20.4014 bits (41), Expect = 4.470e-12
Identity = 9/21 (42.86%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PV+ +      VFW
Sbjct:  393 PGGDISEPVSQSTLRIVKVFW 413          
The following BLAST results are available for this feature:
BLAST of DY306876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
VATA_SULIY1.943e-1330.86V-type ATP synthase alpha chain OS=Sulfolobus isla... [more]
VATA_ANADF7.206e-1332.70V-type ATP synthase alpha chain OS=Anaeromyxobacte... [more]
VATA_HALSA1.212e-1232.61V-type ATP synthase alpha chain OS=Halobacterium s... [more]
VATA_HALS31.212e-1232.61V-type ATP synthase alpha chain OS=Halobacterium s... [more]
VATA_NANEQ2.655e-1231.03V-type ATP synthase alpha chain OS=Nanoarchaeum eq... [more]
VATA_CENSY2.738e-1229.55V-type ATP synthase alpha chain OS=Cenarchaeum sym... [more]
VATA_CLOBB3.443e-1233.58V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_ANASK3.577e-1234.62V-type ATP synthase alpha chain OS=Anaeromyxobacte... [more]
VATA_ANAD23.577e-1234.62V-type ATP synthase alpha chain OS=Anaeromyxobacte... [more]
VATA_CLOBA4.470e-1233.58V-type ATP synthase alpha chain OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306876 ID=DY306876; Name=DY306876; organism=Citrus sinensis; type=EST; length=1216bp
GCATAAATACATAAATAAGGATTGGACTTCGAACTTTTGATCACTAGTCA
AAAAAAGGAATTGAGGGAACGACAGGAAGAACAAAAAAATACATAATAGA
ATCAAATTTACCACACTGCAACTAGAAGGCCAAACAAGCACTGCAAAGTG
GCATAACATGGACCCACCAACATTTTGGTTCTCCATTCAATGGAACATTG
AGAAGCCAACTGTTGTTACCGTAAGATCAGAGGTGCCGCTGGGACTACAA
AGAATCTAACTTGACACTTTCAATCATCGAGTTTCATCCTCGAGGGCGCG
GAAACCAGCGGTCAGATCCTCGTGCAGCTTTTTGAATTTAGCAACCAGAG
CTGGTTCTCCTTCTGCTGGGTCCTCAAACTTCTGTGATACTAATCTGTAA
AATAGATCTCCCAGCCGATGCTTGATAAGGGTGTAAGTTATCTTCTGACC
ATCCATACCAGCTCCTTTCTCTACGGCCTGATTGGCCAAGTTATAGAAAT
GGATAATGTTACGCATCATCCAAACAGACTTGTAGAAAGGGCAGAACTTG
TCATATGGAGTAAATGCGTTCTGAGCAAGATAGTCCTCCCTCAAAAGCTT
AGCAGTCTCTAGCGTAATCTTATCTCCTTCAGCCAAAGCATCCTTTCCGA
CAAGTTGCACAATTTCATTCAGGTCATCTTCTCTCTGCAACACCTCTCTA
GCCTTTGTCCTGATGTTAATAAAATCCGGATCAAATTGCTCATAGAAAAA
CTCTAATGCTGTTGAAAAACTCGAGTAAAAATAAACCAGTTTTACGAAAG
GAAAAGGCTTCTCCGCCCAAGTTTCTAATCCAAACCCAAAAAACCGCACA
ATGCTAAGGGGGGGCAGATGTTACAGGAACCGAAAAACCCCCTCCAGGNN
NNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGGAAATCCCAAAAAAATTCC
CCGGGCCCTCCCTTTAACAACCCCCCTGGACGCGGGAAAACCCCCGCCGG
TTACCCACAATTAACCCCCCCTCCGCCCCAATCCCCCCCTTTCCCCACCT
CGGCCAAAAAAAACCAAAAAAAAACCCCCCCACCCCAACTCCCCCCTCCC
CCCCCAAAACTTCCCCCCCCCCCCCGCAAAGGGGCCAAAAAGGGGGAAAA
AAATTTTTAAAAACCCCTTTTTTAAAATTTTTTTTGTTTTAAAAAAAATT
CTCTCTCCCTTTTTTA
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