DY306876

Overview
NameDY306876
Unique NameDY306876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1216
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_THESI (V-type ATP synthase alpha chain OS=Thermococcus sp. (strain KI) GN=atpA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.194e-20
Identity = 59/178 (33.15%), Postives = 100/178 (56.18%), Query Frame = -2
Query:  313 FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 843
            F+    +    + FP +  +  YS +  A++ ++++  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  411 FWALDADLARRRHFPAINWLRSYSLYVDAIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALIDETNQQFEEL 579          

HSP 2 Score: 21.1718 bits (43), Expect = 2.194e-20
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PV         VFW
Sbjct:  392 PGGDFSEPVVQNTLRVVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_PYRKO (V-type ATP synthase alpha chain OS=Pyrococcus kodakaraensis GN=atpA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.194e-20
Identity = 59/178 (33.15%), Postives = 100/178 (56.18%), Query Frame = -2
Query:  313 FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 843
            F+    +    + FP +  +  YS +  A++ ++++  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    QAV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  411 FWALDADLARRRHFPAINWLRSYSLYIDAIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYEKTMQAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDVEKVRALIDETNQQFEEL 579          

HSP 2 Score: 21.1718 bits (43), Expect = 2.194e-20
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PV         VFW
Sbjct:  392 PGGDFSEPVVQNTLRVVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_THEGJ (V-type ATP synthase alpha chain OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=atpA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.854e-20
Identity = 59/178 (33.15%), Postives = 100/178 (56.18%), Query Frame = -2
Query:  313 FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 843
            F+    +    + FP +  +  YS +  A++ ++++  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FYN   +AV++G  +D  +I    ++ ++G +       KFE   E   AL+ +     E+L
Sbjct:  411 FWALDADLARRRHFPAINWLRSYSLYLDAVQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYNRTMEAVDRGVPVD--EIARLPVREKIGRM-------KFEPDVEKIRALIDETNAQFEEL 579          

HSP 2 Score: 21.1718 bits (43), Expect = 2.854e-20
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PV         VFW
Sbjct:  392 PGGDFSEPVVQNTLRVVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METBU (V-type ATP synthase alpha chain OS=Methanococcoides burtonii (strain DSM 6242) GN=atpA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.855e-20
Identity = 65/183 (35.52%), Postives = 99/183 (54.10%), Query Frame = -2
Query:  316 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHED 858
            L IV+ F+    +    + FP +  +  YS ++  L  +Y E    D+  +R  A ++LQ+E +L EIVQLVG DAL E  ++TLE A+++RE +L QNAF P D +CPF K   ++++I  +  LA  A+E G  M+  KI     K  L  +       KFE+    + AL    KK+ E+
Sbjct:  400 LRIVKVFWALDAKLSQRRHFPSINWLTSYSLYTQGLADWYSENVGADWTQLRDDAMDLLQQESELQEIVQLVGSDALPEDQQLTLEVARMVREYFLQQNAFHPVDTYCPFDKQYKLLKSITRYGELATAALESGVPMN--KIITIKSKDELAKV-------KFEE--NFDAALDVVMKKMDEE 571          

HSP 2 Score: 23.0978 bits (48), Expect = 2.855e-20
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT        VFW
Sbjct:  387 PGGDFSEPVTQNTLRIVKVFW 407          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_PYRFU (V-type ATP synthase alpha chain OS=Pyrococcus furiosus GN=atpA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.779e-20
Identity = 59/184 (32.07%), Postives = 101/184 (54.89%), Query Frame = -2
Query:  295 FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRA 843
            F+    +    + FP +  +  YS +  A++ ++++  DP++  +R KA E+LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR ++ FY     A+ +G  +  ++I    ++  +G +       KFE   E   AL+ K  +  ++L   + A
Sbjct:  839 FWALDADLARRRHFPAINWLTSYSLYVDAVQDWWHKNVDPEWRRMRDKAMELLQKEAELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPQKQVTMMRVLMTFYERTMDAISRGVPL--EEIAKLPVREEIGRM-------KFEPDIEKIRALIDKTNEQFDELLKKYGA 1013          

HSP 2 Score: 21.1718 bits (43), Expect = 4.779e-20
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PV         VFW
Sbjct:  820 PGGDFSEPVVQNTLRVVKVFW 840          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METS3 (V-type ATP synthase alpha chain OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=atpA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.279e-20
Identity = 59/160 (36.88%), Postives = 89/160 (55.62%), Query Frame = -2
Query:  337 EKPFPFVKLVYFYSSFSTALEFFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAK 813
            ++ FP +  +  YS +  ++E ++ E    D+   R +A  +LQ+E +L EIVQLVG DAL E D+ TLET ++LRED+L QNAF   D +CP  K   M++ I+ F+  A  AV  G G+  Q I    +K  +G + Y +   +F    E   A + K
Sbjct:  423 KRHFPSIDWLQSYSLYVDSIEGWWAENVAADWRETRDQAMILLQKESELQEIVQLVGPDALPEADQATLETTRMLREDFLQQNAFDDIDTYCPPVKQYNMLKTILLFHKEALAAV--GRGVPIQNIVALPVKEEIGKMKY-IPQDEFAAKCEEIQAAITK 579          

HSP 2 Score: 24.6386 bits (52), Expect = 6.279e-20
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT      C VFW
Sbjct:  394 PGGDLSEPVTQNTLRICKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METTH (V-type ATP synthase alpha chain OS=Methanobacterium thermoautotrophicum GN=atpA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.381e-19
Identity = 49/119 (41.18%), Postives = 76/119 (63.87%), Query Frame = -2
Query:  460 EKPFPFVKLVYFYSSFSTAL-EFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 813
            ++ FP +  +  YS +  ++ E++    DP++   R +A  +LQ+E +L EIVQLVG DAL + ++ITLET +++RED+L QNA+   D +C   K   M+R II F+  A  A+EKGA
Sbjct:  423 KRHFPSIDWLQSYSLYIDSVQEWWASNVDPEWRKFRDEAMALLQKEAELQEIVQLVGPDALPDRERITLETTRMIREDFLQQNAYHEVDTYCSPSKQFEMLRTIIMFHRNATAALEKGA 541          

HSP 2 Score: 24.6386 bits (52), Expect = 1.381e-19
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT      C VFW
Sbjct:  394 PGGDLSEPVTQNTLRICKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_PYRHO (V-type ATP synthase alpha chain OS=Pyrococcus horikoshii GN=atpA PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.779e-19
Identity = 56/178 (31.46%), Postives = 100/178 (56.18%), Query Frame = -2
Query:  313 FFGFGLETWAEKPFPFVKLVYFYSSFSTAL-EFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 843
            F+    +    + FP +  +  YS +  A+ +++++  DP++  +R KA  +LQ+E +L EIV++VG DAL E ++  L  A++LREDYL Q+AF   D +CP  K V MMR +++FY+   +A+ +G  +  ++I    ++  +G +       KFE       +L+ K  +  E+L
Sbjct:  790 FWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVRIVGPDALPERERAILLVARMLREDYLQQDAFDEVDTYCPPEKQVTMMRVLLNFYDKTMEAINRGVPL--EEIAKLPVREEIGRM-------KFERDVSKIRSLIDKTNEQFEEL 958          

HSP 2 Score: 21.1718 bits (43), Expect = 1.779e-19
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PV         VFW
Sbjct:  771 PGGDFSEPVVQNTLRVVKVFW 791          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_DESSY (V-type ATP synthase alpha chain OS=Desulfurococcus sp. (strain SY) GN=atpA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.796e-19
Identity = 57/178 (32.02%), Postives = 100/178 (56.18%), Query Frame = -2
Query:  313 FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 843
            F+    +    + FP +  +  YS +  +++ ++++  DP++  +R  A  +LQ+E +L EIV++VG DAL + +K  L   ++LREDYL Q+AF   D +CP  K V MMR I++FY    +AV++G  +D  +I    ++ ++G +       KFE   E   AL+ +  +  E+L
Sbjct:  411 FWALDADLARRRHFPAINWLRSYSLYLDSIQDWWHKNVDPEWRKMRDTAMALLQKEAELQEIVRIVGPDALPDREKAILIVTRMLREDYLQQDAFDEVDTYCPPKKQVTMMRVILNFYERTMEAVDRGVPVD--EIAKLPVREKIGRM-------KFEPDIEKIRALIDETNEQFEEL 579          

HSP 2 Score: 21.1718 bits (43), Expect = 1.796e-19
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PV         VFW
Sbjct:  392 PGGDFSEPVVQNTLRVVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METB6 (V-type ATP synthase alpha chain OS=Methanoregula boonei (strain 6A8) GN=atpA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 5.137e-19
Identity = 65/191 (34.03%), Postives = 103/191 (53.93%), Query Frame = -2
Query:  292 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRAL 858
            L IV+ F+    +    + FP +  +  YS +  AL  +Y++   PD+  +R+ A  VLQ+E +L EIVQLVG DAL E ++IT+E A+++RE +L QNA+   D FC   K   MM+ I  + +LAN A  + AG+   +IT    K+ L  + +    + ++ P            K+ +D+ A F AL
Sbjct:  409 LRIVKVFWALDAKLSQRRHFPAINWLNSYSLYLDALHDWYDKNVSPDWNKLRSWAMGVLQKEAELQEIVQLVGSDALPETEQITIEVARMIREIFLQQNAYDAVDTFCDMQKQYDMMKAIRLYSDLANTA--QAAGVSPAQITTIKAKNELPQIKF---VKDYKQP----------LAKIEKDMDAEFNAL 584          

HSP 2 Score: 23.0978 bits (48), Expect = 5.137e-19
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT        VFW
Sbjct:  396 PGGDFSEPVTQNTLRIVKVFW 416          
The following BLAST results are available for this feature:
BLAST of DY306876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
VATA_THESI2.194e-2033.15V-type ATP synthase alpha chain OS=Thermococcus sp... [more]
VATA_PYRKO2.194e-2033.15V-type ATP synthase alpha chain OS=Pyrococcus koda... [more]
VATA_THEGJ2.854e-2033.15V-type ATP synthase alpha chain OS=Thermococcus ga... [more]
VATA_METBU2.855e-2035.52V-type ATP synthase alpha chain OS=Methanococcoide... [more]
VATA_PYRFU4.779e-2032.07V-type ATP synthase alpha chain OS=Pyrococcus furi... [more]
VATA_METS36.279e-2036.88V-type ATP synthase alpha chain OS=Methanobrevibac... [more]
VATA_METTH1.381e-1941.18V-type ATP synthase alpha chain OS=Methanobacteriu... [more]
VATA_PYRHO1.779e-1931.46V-type ATP synthase alpha chain OS=Pyrococcus hori... [more]
VATA_DESSY1.796e-1932.02V-type ATP synthase alpha chain OS=Desulfurococcus... [more]
VATA_METB65.137e-1934.03V-type ATP synthase alpha chain OS=Methanoregula b... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306876 ID=DY306876; Name=DY306876; organism=Citrus sinensis; type=EST; length=1216bp
GCATAAATACATAAATAAGGATTGGACTTCGAACTTTTGATCACTAGTCA
AAAAAAGGAATTGAGGGAACGACAGGAAGAACAAAAAAATACATAATAGA
ATCAAATTTACCACACTGCAACTAGAAGGCCAAACAAGCACTGCAAAGTG
GCATAACATGGACCCACCAACATTTTGGTTCTCCATTCAATGGAACATTG
AGAAGCCAACTGTTGTTACCGTAAGATCAGAGGTGCCGCTGGGACTACAA
AGAATCTAACTTGACACTTTCAATCATCGAGTTTCATCCTCGAGGGCGCG
GAAACCAGCGGTCAGATCCTCGTGCAGCTTTTTGAATTTAGCAACCAGAG
CTGGTTCTCCTTCTGCTGGGTCCTCAAACTTCTGTGATACTAATCTGTAA
AATAGATCTCCCAGCCGATGCTTGATAAGGGTGTAAGTTATCTTCTGACC
ATCCATACCAGCTCCTTTCTCTACGGCCTGATTGGCCAAGTTATAGAAAT
GGATAATGTTACGCATCATCCAAACAGACTTGTAGAAAGGGCAGAACTTG
TCATATGGAGTAAATGCGTTCTGAGCAAGATAGTCCTCCCTCAAAAGCTT
AGCAGTCTCTAGCGTAATCTTATCTCCTTCAGCCAAAGCATCCTTTCCGA
CAAGTTGCACAATTTCATTCAGGTCATCTTCTCTCTGCAACACCTCTCTA
GCCTTTGTCCTGATGTTAATAAAATCCGGATCAAATTGCTCATAGAAAAA
CTCTAATGCTGTTGAAAAACTCGAGTAAAAATAAACCAGTTTTACGAAAG
GAAAAGGCTTCTCCGCCCAAGTTTCTAATCCAAACCCAAAAAACCGCACA
ATGCTAAGGGGGGGCAGATGTTACAGGAACCGAAAAACCCCCTCCAGGNN
NNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGGAAATCCCAAAAAAATTCC
CCGGGCCCTCCCTTTAACAACCCCCCTGGACGCGGGAAAACCCCCGCCGG
TTACCCACAATTAACCCCCCCTCCGCCCCAATCCCCCCCTTTCCCCACCT
CGGCCAAAAAAAACCAAAAAAAAACCCCCCCACCCCAACTCCCCCCTCCC
CCCCCAAAACTTCCCCCCCCCCCCCGCAAAGGGGCCAAAAAGGGGGAAAA
AAATTTTTAAAAACCCCTTTTTTAAAATTTTTTTTGTTTTAAAAAAAATT
CTCTCTCCCTTTTTTA
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