DY306876

Overview
NameDY306876
Unique NameDY306876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1216
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METBA (V-type ATP synthase alpha chain OS=Methanosarcina barkeri GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.527e-17
Identity = 47/134 (35.07%), Postives = 80/134 (59.70%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTAL-EFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+    +    + FP +  +  YS +  +L ++F +   PD++ +R +A E+LQ E +L EIVQLVG DAL +  ++ LE  ++LRE +L QNAF P D + PF +   +++ I+ + + A  A++ G
Sbjct:  400 LRIVKVFWALDAKLSQRRHFPAINWLNSYSLYKDSLNDWFADNVAPDYVPLRERAMEMLQTESELQEIVQLVGSDALPDDQQLLLEITRMLREIFLQQNAFHPVDAYSPFDQQYKILKAIMKWGDAAMDALKSG 533          

HSP 2 Score: 23.0978 bits (48), Expect = 7.527e-17
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT        VFW
Sbjct:  387 PGGDFSEPVTQNTLRIVKVFW 407          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_UNCMA (V-type ATP synthase alpha chain OS=Uncultured methanogenic archaeon RC-I GN=atpA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.226e-17
Identity = 60/192 (31.25%), Postives = 104/192 (54.17%), Query Frame = -2
Query:  289 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALE 858
            L IV+ F+    +    + FP +  +  YS +  +L+ +Y++   P++  ++ ++ E+LQRE +L EIVQLVG DAL E  ++T+E A+++RE +L QNA+   D +C   K + M+++I+ F   A  A+  G  M   KI     K+ L  +       KFE   +      A   K+++D+   F++LE
Sbjct:  401 LRIVKVFWALDAKLAQRRHFPSINWLNSYSLYQDSLKDWYDKNISPEWNQLKAESMELLQRESELQEIVQLVGSDALPEDQQLTIEIARMIREIFLQQNAYHEVDTYCSLDKQLKMLKSIMQFGAYARTALASGVPM--SKILNLNSKNDLAKV-------KFEANYD------AYLTKVNDDMKKEFKSLE 577          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_THESM (V-type ATP synthase alpha chain OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=atpA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.226e-17
Identity = 56/178 (31.46%), Postives = 98/178 (55.06%), Query Frame = -2
Query:  313 FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 843
            F+    +    + FP +  +  YS +  +++ +++   DP++  +R +A  +LQ+E +L EIV++VG DAL E +K  L  A++LREDYL Q+AF   D +C   K V MMR I++FY    +A++  AG+  ++I    ++  +G +       K+    E    L+ K K+  E+L
Sbjct:  411 FWALDADLARRRHFPAINWLTSYSLYVDSIKDWWQNNVDPEWKAMRDEAMALLQKESELEEIVRIVGPDALPEREKAILLVARMLREDYLQQDAFHEVDTYCLPKKQVTMMRVILNFYRHTMRAID--AGIPVEEIAKLPVREEIGRM-------KYNPNIEEIAVLMEKTKEQFEEL 579          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_STRPI (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain Hungary19A-6) GN=atpA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.779e-17
Identity = 52/135 (38.52%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  460 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 858
            L IV+ F+G        + FP +  +  YS +  ++  + +  +    N + T+A   LQRE  L EIV+LVG D+L+E +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  407 LRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDDKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSENERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          

HSP 2 Score: 20.7866 bits (42), Expect = 9.779e-17
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT        VFW
Sbjct:  394 PGGDISEPVTQNTLRIVKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METTP (V-type ATP synthase alpha chain OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 9.785e-17
Identity = 63/192 (32.81%), Postives = 100/192 (52.08%), Query Frame = -2
Query:  289 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLTAGFRALE 858
            L IV+ F+         + FP +  +  YS +   LE +Y E   PD+  ++ +A  +LQ   +L EIV LVG DAL E  ++TLE A+++   +LAQ+AF P D FCP+ K   +++ I+ + + A  A+ +G  +D  +I     K  L  L  R+V        + EP L    KK+ + + A F AL+
Sbjct:  400 LRIVKVFWALDSRLTQRRHFPSINWLDSYSLYEKDLESWYAENVAPDWNQLKRRAMAILQENAELEEIVMLVGSDALPEDQQLTLEVARMIINFWLAQSAFHPVDTFCPYKKQYDLLKAILTYRDYAFDALRRGVAVD--QIKSVPSKDALAKL--RMVE-------DYEPDL----KKVMDQMKAEFEALK 576          

HSP 2 Score: 21.9422 bits (45), Expect = 9.785e-17
Identity = 10/21 (47.62%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG F+ PVT        VFW
Sbjct:  387 PGGDFTEPVTQNTLRIVKVFW 407          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLONN (V-type ATP synthase alpha chain OS=Clostridium novyi (strain NT) GN=atpA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.271e-16
Identity = 51/143 (35.66%), Postives = 87/143 (60.84%), Query Frame = -2
Query:  436 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKIT 858
            L IV+ F+G   +    + FP +  +  YS +  ++  + ++    +++++RT+A  +LQ E +L EIV+LVG DAL+E D++ LE AK +REDYL QNAF   D +    K   M++ ++ F + A +A++  AG+  +KIT
Sbjct:  405 LRIVKVFWGLDAQLAYRRHFPAINWLNSYSLYLDSIGRWMDRNVSEEWVDLRTRAMTILQEEANLEEIVRLVGIDALSESDRLKLEVAKSIREDYLMQNAFHDVDTYSSLEKQYKMLKLVLSFQDEAERALK--AGVYLEKIT 545          

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  392 PGGDLSEPVTQATLRIVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: NTPA_ENTHR (V-type sodium ATPase catalytic subunit A OS=Enterococcus hirae GN=ntpA PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.403e-16
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = -2
Query:  460 FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQF-DPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 843
            F+G       ++ FP +  +  YS +ST +  + +Q    D+ ++ T+   +LQ E+ LNEIV+LVG D+L++ D++TLE AK +REDYL QNAF   D F    K   M++ I+ F   A +A+  GA
Sbjct:  412 FWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGA 540          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA3_METHJ (V-type ATP synthase alpha chain 3 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=atpA3 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.652e-16
Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+    +   ++ FP +  +  YS +S     ++E+   P+FI ++ +  E+LQRE++L EI++LVG + L E D++ L  A++LRE YL Q AF  +D F    K   M++ I  F++ A +A+E G
Sbjct:  408 LRIVKVFWALDADLAYQRHFPAINWLMSYSLYSPIAGIWWEEHIGPEFIRMKQEMMEILQRENELEEIIRLVGPETLPESDRLLLLKAEILRESYLMQYAFDEFDTFTGPKKQYRMLKAIFTFFSQAERALETG 541          

HSP 2 Score: 23.0978 bits (48), Expect = 1.652e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT        VFW
Sbjct:  395 PGGDFSEPVTQNTLRIVKVFW 415          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_ARCFU (V-type ATP synthase alpha chain OS=Archaeoglobus fulgidus GN=atpA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.653e-16
Identity = 61/190 (32.11%), Postives = 96/190 (50.53%), Query Frame = -2
Query:  313 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSF-STALEFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG------AGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDL 858
            L IV+ F+    +  A + FP +  +  YS +  T  ++F E    ++  +R  A EVLQ E +L EIVQLVG DAL E  ++ LE A+++RE YL Q A+ P D +C   K   M++ I    +   QA+E G      AG++G +                    KFE+  + +PA+ A  +K+ ++L
Sbjct:  406 LRIVKVFWALDAKLAARRHFPAINWLQSYSLYVDTLKDWFAENVSEEWNELRRWAMEVLQEEANLQEIVQLVGSDALPESQRVLLEVARIIREVYLIQYAYHPVDTYCSVQKQYDMLKAIKQINDWFYQALEAGKTIDEIAGVEGLE---------------EFARAKFEE--DYKPAMEAALEKIRKNL 578          

HSP 2 Score: 23.0978 bits (48), Expect = 1.653e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT        VFW
Sbjct:  393 PGGDFSEPVTQNTLRIVKVFW 413          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOBM (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=atpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.147e-16
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+G   +    + FP +  +  YS +   +  +  E    D+  +RT+A  +LQ E +L EIV+LVG DAL+E D++ LE AK LREDYL QNAF   D +    K   M++ ++ FY+   +A+  G
Sbjct:  407 LRIVKVFWGLDSQLAYRRHFPAINWLNSYSLYLEKISPWMDENVASDWTALRTRAMSLLQEEANLEEIVRLVGIDALSEKDRLKLEVAKSLREDYLQQNAFHEVDTYASLEKQYKMLKLVLFFYDETQRALNAG 540          

HSP 2 Score: 23.0978 bits (48), Expect = 2.147e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  394 PGGDLSEPVTQATLRIVKVFW 414          
The following BLAST results are available for this feature:
BLAST of DY306876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
VATA_METBA7.527e-1735.07V-type ATP synthase alpha chain OS=Methanosarcina ... [more]
VATA_UNCMA8.226e-1731.25V-type ATP synthase alpha chain OS=Uncultured meth... [more]
VATA_THESM8.226e-1731.46V-type ATP synthase alpha chain OS=Thermococcus si... [more]
VATA_STRPI9.779e-1738.52V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_METTP9.785e-1732.81V-type ATP synthase alpha chain OS=Methanosaeta th... [more]
VATA_CLONN1.271e-1635.66V-type ATP synthase alpha chain OS=Clostridium nov... [more]
NTPA_ENTHR1.403e-1637.98V-type sodium ATPase catalytic subunit A OS=Entero... [more]
VATA3_METHJ1.652e-1635.07V-type ATP synthase alpha chain 3 OS=Methanospiril... [more]
VATA_ARCFU1.653e-1632.11V-type ATP synthase alpha chain OS=Archaeoglobus f... [more]
VATA_CLOBM2.147e-1637.31V-type ATP synthase alpha chain OS=Clostridium bot... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306876 ID=DY306876; Name=DY306876; organism=Citrus sinensis; type=EST; length=1216bp
GCATAAATACATAAATAAGGATTGGACTTCGAACTTTTGATCACTAGTCA
AAAAAAGGAATTGAGGGAACGACAGGAAGAACAAAAAAATACATAATAGA
ATCAAATTTACCACACTGCAACTAGAAGGCCAAACAAGCACTGCAAAGTG
GCATAACATGGACCCACCAACATTTTGGTTCTCCATTCAATGGAACATTG
AGAAGCCAACTGTTGTTACCGTAAGATCAGAGGTGCCGCTGGGACTACAA
AGAATCTAACTTGACACTTTCAATCATCGAGTTTCATCCTCGAGGGCGCG
GAAACCAGCGGTCAGATCCTCGTGCAGCTTTTTGAATTTAGCAACCAGAG
CTGGTTCTCCTTCTGCTGGGTCCTCAAACTTCTGTGATACTAATCTGTAA
AATAGATCTCCCAGCCGATGCTTGATAAGGGTGTAAGTTATCTTCTGACC
ATCCATACCAGCTCCTTTCTCTACGGCCTGATTGGCCAAGTTATAGAAAT
GGATAATGTTACGCATCATCCAAACAGACTTGTAGAAAGGGCAGAACTTG
TCATATGGAGTAAATGCGTTCTGAGCAAGATAGTCCTCCCTCAAAAGCTT
AGCAGTCTCTAGCGTAATCTTATCTCCTTCAGCCAAAGCATCCTTTCCGA
CAAGTTGCACAATTTCATTCAGGTCATCTTCTCTCTGCAACACCTCTCTA
GCCTTTGTCCTGATGTTAATAAAATCCGGATCAAATTGCTCATAGAAAAA
CTCTAATGCTGTTGAAAAACTCGAGTAAAAATAAACCAGTTTTACGAAAG
GAAAAGGCTTCTCCGCCCAAGTTTCTAATCCAAACCCAAAAAACCGCACA
ATGCTAAGGGGGGGCAGATGTTACAGGAACCGAAAAACCCCCTCCAGGNN
NNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGGAAATCCCAAAAAAATTCC
CCGGGCCCTCCCTTTAACAACCCCCCTGGACGCGGGAAAACCCCCGCCGG
TTACCCACAATTAACCCCCCCTCCGCCCCAATCCCCCCCTTTCCCCACCT
CGGCCAAAAAAAACCAAAAAAAAACCCCCCCACCCCAACTCCCCCCTCCC
CCCCCAAAACTTCCCCCCCCCCCCCGCAAAGGGGCCAAAAAGGGGGAAAA
AAATTTTTAAAAACCCCTTTTTTAAAATTTTTTTTGTTTTAAAAAAAATT
CTCTCTCCCTTTTTTA
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