DY306876

Overview
NameDY306876
Unique NameDY306876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1216
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_THEAC (V-type ATP synthase alpha chain OS=Thermoplasma acidophilum GN=atpA PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 5.332e-16
Identity = 43/119 (36.13%), Postives = 72/119 (60.50%), Query Frame = -2
Query:  451 FPFVKLVYFYSSFSTALEFFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 804
            FP +  +  YS ++  L  +Y++    ++  +R +A E+LQRE +L E+ QLVG DA+ E +K  L+ A+++RED+L Q+AF   D +C   K   M++ I+      N+A++ GA MD
Sbjct:  596 FPSINWLNSYSLYTEDLRSWYDKNVSSEWSALRERAMEILQRESELQEVAQLVGYDAMPEKEKSILDVARIIREDFLQQSAFDEIDAYCSLKKQYLMLKAIMEIDTYQNKALDSGATMD 714          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METLZ (V-type ATP synthase alpha chain OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.332e-16
Identity = 54/151 (35.76%), Postives = 84/151 (55.63%), Query Frame = -2
Query:  412 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRL 858
            L IV+ F+         + FP +  +  YS +   L  +Y E+  PD+  +R+   EVLQ+E +L EIVQLVG DAL E ++IT+E A+++RE +L QN F P D +C   K + M + I  + +LA  A  + AG+   +I     K+ +
Sbjct:  404 LRIVKVFWALDANLSRRRHFPAINWLQSYSLYMAQLNDYYDEKVSPDWNKLRSWFMEVLQKEAELQEIVQLVGSDALPETEQITIEVARMMRELFLQQNGFDPVDTYCDLPKQLDMFKMIRTYADLAYAA--QAAGVPPSQILAVKAKNEM 552          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_DEIGD (V-type ATP synthase alpha chain OS=Deinococcus geothermalis (strain DSM 11300) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.332e-16
Identity = 44/119 (36.97%), Postives = 70/119 (58.82%), Query Frame = -2
Query:  451 FPFVKLVYFYSSFSTALEFFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 804
            FP +     YS F+  L+ +Y E    DF  +R +   +LQ+E  L E+VQLVG DAL + +++ +ET ++LR+D+L QN F P D      K+  +M+ ++ FY+ A  A+  G G+D
Sbjct:  422 FPAINWNGSYSLFTPILDSWYRENVGRDFPELRQRISNLLQQEASLQEVVQLVGPDALQDQERLVIETGRMLRQDFLQQNGFDPVDASASMPKNYGLMKMMLKFYDEAEAALRNGVGID 540          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_DEIDV (V-type ATP synthase alpha chain OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.332e-16
Identity = 44/119 (36.97%), Postives = 72/119 (60.50%), Query Frame = -2
Query:  451 FPFVKLVYFYSSFSTALEFFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 804
            FP +     YS F+  L+ +Y Q   PDF  +R +   +LQ+E  L E+VQLVG DAL + +++ +ET ++LR+D+L QN F P D      K+  +M+  + FY+ A+ A++ G+ +D
Sbjct:  422 FPAINWNGSYSLFTPILDKWYRQNVGPDFPELRQRITNLLQQEAALQEVVQLVGPDALQDNERLIIETGRMLRQDFLQQNGFDPVDASASMPKNYGLMKMFLKFYDEADLALKNGSTID 540          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_THEP3 (V-type ATP synthase alpha chain OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=atpA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.128e-16
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = -2
Query:  463 FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 843
            F+    E    + FP +  +  YS +S  +E +  +    D+  +R++A  +LQ E  L EIV+LVG DAL+  D++ LE A+ +RED+L QNAF   D +    K   M++ I+ FY  A +A+EKG
Sbjct:  412 FWALDSELAYARHFPAINWLTSYSLYSDVVEDYMNKNVSSDWGELRSEAMRLLQEEASLQEIVRLVGIDALSTRDRLVLEVARSIREDFLHQNAFHEVDTYSSMEKQYRMLKLIMIFYQEAQKALEKG 539          

HSP 2 Score: 23.0978 bits (48), Expect = 6.128e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  393 PGGDLSEPVTQATLRVVKVFW 413          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_THEVO (V-type ATP synthase alpha chain OS=Thermoplasma volcanium GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.095e-16
Identity = 42/119 (35.29%), Postives = 72/119 (60.50%), Query Frame = -2
Query:  451 FPFVKLVYFYSSFSTALEFFY-EQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 804
            FP +  +  YS ++  L  +Y E    D+ ++R++A ++LQRE +L E+ QLVG DA+ E +K  L+ A+++RED+L Q+AF   D +C   K   M++ I+   +  + A++ G  MD
Sbjct:  608 FPSINWLNSYSLYTEDLRHWYDENVAKDWGSLRSQAMDILQRESELQEVAQLVGYDAMPEKEKSILDVARIIREDFLQQSAFDEIDSYCSLRKQYLMLKAIMELNSYQSMAIDHGVTMD 726          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_METS5 (V-type ATP synthase alpha chain OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=atpA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.035e-15
Identity = 43/115 (37.39%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  463 FPFVKLVYFYSSFSTAL-EFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 804
            +P +  +  +SS+   + +++ +  DPD+  +R      L RED+L +IV+LVG ++LAE DK+TLE A+L++E +L QNA+   D F    K   +M+ I H+   A  AVE+G
Sbjct:  426 YPAINWLQGFSSYVDLVSDWWIKNVDPDWRIMRDFMVRTLLREDELKQIVRLVGPESLAEKDKLTLEVARLIKEAFLKQNAYDDIDAFSSPQKQARIMKLIYHYNQYATNAVERG 540          

HSP 2 Score: 25.0238 bits (53), Expect = 1.035e-15
Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG F+ PVTS       VFW
Sbjct:  394 PGGDFTEPVTSTTLRFVRVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_HALVO (V-type ATP synthase alpha chain OS=Halobacterium volcanii GN=atpA PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.035e-15
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = -2
Query:  451 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 858
            L IV+ F+    +    + FP +     YS +   L+ +F E  + D+   R  A +VL  E++L EIVQLVGKDAL E  ++TLE A+ LRE YL QNAF P D +C   K+  ++  I  F + A +A+E G  ++
Sbjct:  410 LRIVKTFWALDADLAERRHFPAINWNESYSLYQEQLDPWFVENVEDDWAEERQWAVDVLDEENELQEIVQLVGKDALPEDQQLTLEIARYLREAYLQQNAFHPTDTYCSPEKTYGILTAIHAFNDEAFKALEAGVPVE 547          

HSP 2 Score: 21.557 bits (44), Expect = 1.035e-15
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT         FW
Sbjct:  397 PGGDFSEPVTQNTLRIVKTFW 417          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_NATPD (V-type ATP synthase alpha chain OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=atpA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.345e-15
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = -2
Query:  451 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 858
            L IV+ F+    +    + FP +     YS +   L+ ++ E    +F  +R  A +VL  ED+L EIVQLVGKDAL E  ++TLE A+ +RE +L QNAF   D +C   K+  M+  I HF + A +A++ G  ++
Sbjct:  409 LRIVKCFWALDADLAERRHFPSINWNESYSLYKEQLDPWWRENVHEEFPEVRQWAVDVLDEEDELQEIVQLVGKDALPEDQQLTLEVARYIREAWLQQNAFHDVDTYCEPEKTYQMLTAIQHFNDEAFEALDAGVPVE 546          

HSP 2 Score: 21.1718 bits (43), Expect = 1.345e-15
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT         FW
Sbjct:  396 PGGDFSEPVTQNTLRIVKCFW 416          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_HALWD (V-type ATP synthase alpha chain OS=Haloquadratum walsbyi (strain DSM 16790) GN=atpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.345e-15
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = -2
Query:  451 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMD 858
            L IV+ F+    +    + FP +     YS +   L+ +F E  + D+   R  A +VL  E +L EIVQLVGKDAL +  ++TLE A+ LRE YL QNAF P D +C   K+   +  I  F + A +A++ G  +D
Sbjct:  409 LRIVKTFWALDADLAERRHFPSINWDESYSLYKEQLDPWFQENVEDDWPEERQWAVDVLDEESELQEIVQLVGKDALPDDQQLTLEVARYLRESYLQQNAFHPVDTYCSPEKTYLTVTAIHQFNDEAFEALDAGVPVD 546          

HSP 2 Score: 21.557 bits (44), Expect = 1.345e-15
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG FS PVT         FW
Sbjct:  396 PGGDFSEPVTQNTLRIVKTFW 416          
The following BLAST results are available for this feature:
BLAST of DY306876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
VATA_THEAC5.332e-1636.13V-type ATP synthase alpha chain OS=Thermoplasma ac... [more]
VATA_METLZ5.332e-1635.76V-type ATP synthase alpha chain OS=Methanocorpuscu... [more]
VATA_DEIGD5.332e-1636.97V-type ATP synthase alpha chain OS=Deinococcus geo... [more]
VATA_DEIDV5.332e-1636.97V-type ATP synthase alpha chain OS=Deinococcus des... [more]
VATA_THEP36.128e-1636.72V-type ATP synthase alpha chain OS=Thermoanaerobac... [more]
VATA_THEVO9.095e-1635.29V-type ATP synthase alpha chain OS=Thermoplasma vo... [more]
VATA_METS51.035e-1537.39V-type ATP synthase alpha chain OS=Metallosphaera ... [more]
VATA_HALVO1.035e-1538.41V-type ATP synthase alpha chain OS=Halobacterium v... [more]
VATA_NATPD1.345e-1536.96V-type ATP synthase alpha chain OS=Natronomonas ph... [more]
VATA_HALWD1.345e-1537.68V-type ATP synthase alpha chain OS=Haloquadratum w... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306876 ID=DY306876; Name=DY306876; organism=Citrus sinensis; type=EST; length=1216bp
GCATAAATACATAAATAAGGATTGGACTTCGAACTTTTGATCACTAGTCA
AAAAAAGGAATTGAGGGAACGACAGGAAGAACAAAAAAATACATAATAGA
ATCAAATTTACCACACTGCAACTAGAAGGCCAAACAAGCACTGCAAAGTG
GCATAACATGGACCCACCAACATTTTGGTTCTCCATTCAATGGAACATTG
AGAAGCCAACTGTTGTTACCGTAAGATCAGAGGTGCCGCTGGGACTACAA
AGAATCTAACTTGACACTTTCAATCATCGAGTTTCATCCTCGAGGGCGCG
GAAACCAGCGGTCAGATCCTCGTGCAGCTTTTTGAATTTAGCAACCAGAG
CTGGTTCTCCTTCTGCTGGGTCCTCAAACTTCTGTGATACTAATCTGTAA
AATAGATCTCCCAGCCGATGCTTGATAAGGGTGTAAGTTATCTTCTGACC
ATCCATACCAGCTCCTTTCTCTACGGCCTGATTGGCCAAGTTATAGAAAT
GGATAATGTTACGCATCATCCAAACAGACTTGTAGAAAGGGCAGAACTTG
TCATATGGAGTAAATGCGTTCTGAGCAAGATAGTCCTCCCTCAAAAGCTT
AGCAGTCTCTAGCGTAATCTTATCTCCTTCAGCCAAAGCATCCTTTCCGA
CAAGTTGCACAATTTCATTCAGGTCATCTTCTCTCTGCAACACCTCTCTA
GCCTTTGTCCTGATGTTAATAAAATCCGGATCAAATTGCTCATAGAAAAA
CTCTAATGCTGTTGAAAAACTCGAGTAAAAATAAACCAGTTTTACGAAAG
GAAAAGGCTTCTCCGCCCAAGTTTCTAATCCAAACCCAAAAAACCGCACA
ATGCTAAGGGGGGGCAGATGTTACAGGAACCGAAAAACCCCCTCCAGGNN
NNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGGAAATCCCAAAAAAATTCC
CCGGGCCCTCCCTTTAACAACCCCCCTGGACGCGGGAAAACCCCCGCCGG
TTACCCACAATTAACCCCCCCTCCGCCCCAATCCCCCCCTTTCCCCACCT
CGGCCAAAAAAAACCAAAAAAAAACCCCCCCACCCCAACTCCCCCCTCCC
CCCCCAAAACTTCCCCCCCCCCCCCGCAAAGGGGCCAAAAAGGGGGAAAA
AAATTTTTAAAAACCCCTTTTTTAAAATTTTTTTTGTTTTAAAAAAAATT
CTCTCTCCCTTTTTTA
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