EY702779

Overview
NameEY702779
Unique NameEY702779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length856
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:1..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.153e-74
Identity = 125/179 (69.83%), Postives = 158/179 (88.27%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKP 619
            MASS++SSA VA+ + AS AQASMVAPFTGLKSS+ FP T+K N DIT++ASN G+VQCMKVWPP GL+KFETLSYLP +S+E L KE +YL+R+GW+PC+EF++  G+VYRE+H+SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISFIA KP
Sbjct:    1 MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.506e-74
Identity = 132/182 (72.53%), Postives = 157/182 (86.26%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKPPG 625
            MASS+ISSA VAT  R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP L+DE LLKE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.967e-74
Identity = 131/181 (72.38%), Postives = 157/181 (86.74%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKPPG 625
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.967e-74
Identity = 131/181 (72.38%), Postives = 157/181 (86.74%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKPPG 625
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.381e-74
Identity = 131/179 (73.18%), Postives = 153/179 (85.47%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKP 619
            MASSM+SSA VAT +R   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.722e-74
Identity = 131/179 (73.18%), Postives = 153/179 (85.47%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKP 619
            MASS++S+ATVAT   A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP   KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP
Sbjct:    1 MASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.761e-74
Identity = 134/180 (74.44%), Postives = 149/180 (82.78%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKPP 622
            MASSMISS  V T +RA    A MVAPFTGLKS +  P T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREH++S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.761e-74
Identity = 127/181 (70.17%), Postives = 149/181 (82.32%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKPPG 625
            MASSM+S+A +AT    + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDN+RQVQC+SFIA KP G
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYKPAG 181          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.275e-73
Identity = 127/181 (70.17%), Postives = 156/181 (86.19%), Query Frame = 2
Query:   83 MASSMISSATVAT--AHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKP 619
            MASSM+S+A VAT  A R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:    1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181          
BLAST of EY702779 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.665e-73
Identity = 133/180 (73.89%), Postives = 149/180 (82.78%), Query Frame = 2
Query:   83 MASSMISSATVATAHRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNRRQVQCISFIAAKPP 622
            MASSMISS  V T +RA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
The following BLAST results are available for this feature:
BLAST of EY702779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
RBS_CUCSA1.153e-7469.83Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU1.506e-7472.53Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_TOBAC1.967e-7472.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY1.967e-7472.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_MESCR4.381e-7473.18Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_CAPAN5.722e-7473.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_SOYBN9.761e-7474.44Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_AMAHP9.761e-7470.17Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_MESCR1.275e-7370.17Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_GLYTO1.665e-7373.89Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-B06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702779 ID=EY702779; Name=EY702779; organism=Citrus sinensis; type=EST; length=856bp
CATTTGTCGCCTTTTTCACCGGTCCGGAATTCCTTCCACAACCCACGCGT
CCGTGCAAAGCTATAACAAAGAGCAAGTACCAATGGCTTCCTCAATGATC
TCATCGGCCACCGTTGCCACCGCGCACCGCGCCAGCCTTGCTCAGGCCAG
CATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAA
CCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGA
GTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGAC
TCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCA
ATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAG
AAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGG
ACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAA
CCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCA
TTCGTCCGAATTATCGGATTTGACAACCGGCGTCAAGTGCAGTGCATCAG
TTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTG
TCACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAAT
GATCATTCGATCCATGGGGGTTCGGGTTGCGTTTAATTTGTACTTAGGCT
GCTNGTGCTGCTGCTCCAACTTTTTNGGTTTTCTCCCCCGACCTTGGCTC
TTTTTTTTTTTTAATATATTTAATAATGGAAAAAAAAAAAAAAAAAAAAA
CGCNCG
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