DY306149

Overview
NameDY306149
Unique NameDY306149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1055
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17
Identity = 60/223 (26.91%), Postives = 109/223 (48.88%), Query Frame = 1
Query:  211 NIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-----QHKLYVSNLSWKVRS-THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND-----DVSESNKEEED-----------VSEDQSAES 810
            N    ++V NL +     ++ N F+  G +    ++ + + G+NR + FVT +  E+AQ A  +   +++ GRI+R++FA   K+       +   ++T     + +L + NL W ++   HL   FS  F  V    +     GR  G+ FV    ++ AE A++SL+G E+ GRP+ + +    D      + +++ EEE+           V+ED SA+S
Sbjct:    2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADS 223          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         +K+LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         +K+LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         +K+LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17
Identity = 56/198 (28.28%), Postives = 98/198 (49.49%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQ 798
            +Y+ NL    +  E  +LF   G +  + ++K +  K R F FV  A+ E AQ AV++ + +E  G+ + V  A+K        +K   Q       +     L++ NL  +V    L+  FSA F  ++S  +    +G+S G+GFV + T EEA  A++ ++ + L G+PL +   Q+  +V  S  E +  + +Q
Sbjct:  263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK-EVRRSQLEAQIQARNQ 458          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         +K LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         +K LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17
Identity = 51/181 (28.18%), Postives = 98/181 (54.14%), Query Frame = 1
Query:  193 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 735
            ++ +K+   R ++V NLP+  +  E+KN+F      ++V ++ +K G ++  A++   +  EA+ A+ +    EV GR + +++  +  +   Q+       +T   L V+NLS+      L+E F       +S  + ++N+GR  GY FV F T E+A+ A++S +  E+ GR +RL+F
Sbjct:  362 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKT---LIVNNLSYAASEETLQELFKK----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532          

HSP 2 Score: 78.1814 bits (191), Expect = 9.097e-14
Identity = 52/194 (26.80%), Postives = 100/194 (51.55%), Query Frame = 1
Query:  169 DTTVQTKPEQTQKQNIRRK---IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            D T +   +++QK    R+   + V NL ++ S   ++ LF        +++ ++  G+ + +AFV   + E+A+ A+N  +  E+ GR IR+EF+      +   +A     +    L+V  LS       LRE F  +   +S+++V + + G S G+GFV F++ E+A+AA  +++  E+ G  + L F +
Sbjct:  441 DYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP-SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.148e-16
Identity = 58/198 (29.29%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQ 798
            +Y  N+   FS  E K LF   G +  + + K   GK++ F FV   + E A  AV++ + +E++G+ I V  A+K        KK          ++     L++ NL   + S  L E F   F  ++S  V     G+S G+GFV F++ EEA  AI+ ++ + + G+PL +   Q+  DV  S  E++  + +Q
Sbjct:  234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKP-FGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRK-DVRRSQLEQQIQARNQ 429          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.499e-16
Identity = 58/201 (28.86%), Postives = 98/201 (48.76%), Query Frame = 1
Query:  181 QTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV-SGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            + + E  +K  +   +YV N    F   ++K  F P G +   +++  + GK++ F FV   + E A+AAV   + +++  G+ + V  A+  KK   Q+       E + K         LYV NL   +    LR  FS   N  S+KV+ +  EGRS G+GFV F    EA  A++ L+G+ +  +PL +   Q+ ++
Sbjct:  170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEE 367          

HSP 2 Score: 71.633 bits (174), Expect = 8.514e-12
Identity = 45/196 (22.96%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL-MGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 810
            +++ NL  +     I + F+  G ++  ++   + G ++ + FV   + E A  ++++ +   ++G+ +   +  KF   + +        +    +YV N +       L+EFF   +  ++S  V    +G+S G+GFV+F T E AEAA+ +L+GK++  G+ L +   QK  +  +  K + +  + +  ES
Sbjct:   92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP-YGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHES 283          
The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
YOCE_SCHPO6.730e-1726.91Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]
PABP1_PONAB6.730e-1729.51Polyadenylate-binding protein 1 OS=Pongo abelii GN... [more]
PABP1_HUMAN6.730e-1729.51Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN6.730e-1729.51Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
PABP_SCHPO8.790e-1728.28Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP1_RAT8.790e-1729.51Polyadenylate-binding protein 1 OS=Rattus norvegic... [more]
PABP1_MOUSE8.790e-1729.51Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
NUCL_CHICK8.790e-1728.18Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
PABP_DEBHA1.148e-1629.29Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME1.499e-1628.86Polyadenylate-binding protein OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DA11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bp
GCAGCAGCAACGTCAATCTTCTTAACCAACTACCCTTTTTCGTTTTCGTG
CTTATTTCCCAAACTACCGCACTGTATAAAGCTCCTCCATTCTTCCAATT
CTACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAA
GTATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAAC
ACAGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGT
CTTTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTT
GTAGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGC
ATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAAT
TCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAG
AAATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGA
AACACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTA
CTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAG
GTTGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTC
ATTTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCA
AGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGAT
GATGTATCAGAGAGTAACAAGGAAGAGGAAGATGTATCTGAGGATCAATC
TGCAGAGTCATAGCTATTCCAATTTTTTGGTGGTTTGCAGAATAACAGCG
CCATCAAAATCAGACACGGTAAGCTTTATGGCATCCTCCATTAAAGTGAT
GGAAGACATTCTCCTTGGATCAATCATTTTTGCCTTCACTTTCCTTTTCC
TTTTTTCCCAGGGAAAAGGCTTAATTGACAGTTCCCTTTATTCCAATTCT
AAAAAATTTCTTTCCAAAAAGAAAAGAAAATATGTTTGTATGCCTAATAA
TTTAT
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