DY306149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17 Identity = 60/223 (26.91%), Postives = 109/223 (48.88%), Query Frame = 1 Query: 211 NIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-----QHKLYVSNLSWKVRS-THLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND-----DVSESNKEEED-----------VSEDQSAES 810 N ++V NL + ++ N F+ G + ++ + + G+NR + FVT + E+AQ A + +++ GRI+R++FA K+ + ++T + +L + NL W ++ HL FS F V + GR G+ FV ++ AE A++SL+G E+ GRP+ + + D + +++ EEE+ V+ED SA+S Sbjct: 2 NSNSTLFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKDAFEATTLKDASSEEENKEFVSDEGHSIVTEDASADS 223
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17 Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I +VE + K+ Q R LYV NL + LR+ FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17 Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I +VE + K+ Q R LYV NL + LR+ FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 6.730e-17 Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N +K+LF G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I +VE + K+ Q R LYV NL + LR+ FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17 Identity = 56/198 (28.28%), Postives = 98/198 (49.49%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQ 798 +Y+ NL + E +LF G + + ++K + K R F FV A+ E AQ AV++ + +E G+ + V A+K +K Q + L++ NL +V L+ FSA F ++S + +G+S G+GFV + T EEA A++ ++ + L G+PL + Q+ +V S E + + +Q Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRK-EVRRSQLEAQIQARNQ 458
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17 Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I +VE + K+ Q R LYV NL + LR+ FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17 Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N +K LF G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I +VE + K+ Q R LYV NL + LR+ FS S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 8.790e-17 Identity = 51/181 (28.18%), Postives = 98/181 (54.14%), Query Frame = 1 Query: 193 EQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 735 ++ +K+ R ++V NLP+ + E+KN+F ++V ++ +K G ++ A++ + EA+ A+ + EV GR + +++ + + Q+ +T L V+NLS+ L+E F +S + ++N+GR GY FV F T E+A+ A++S + E+ GR +RL+F Sbjct: 362 KENKKERDARTLFVKNLPYRVTEDEMKNVFE---NALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKT---LIVNNLSYAASEETLQELFKK----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532 HSP 2 Score: 78.1814 bits (191), Expect = 9.097e-14 Identity = 52/194 (26.80%), Postives = 100/194 (51.55%), Query Frame = 1 Query: 169 DTTVQTKPEQTQKQNIRRK---IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741 D T + +++QK R+ + V NL ++ S ++ LF +++ ++ G+ + +AFV + E+A+ A+N + E+ GR IR+EF+ + +A + L+V LS LRE F + +S+++V + + G S G+GFV F++ E+A+AA +++ E+ G + L F + Sbjct: 441 DYTGEKSQQESQKGGGERESKTLIVNNLSYAASEETLQELFKKA---TSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP-SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 1.148e-16 Identity = 58/198 (29.29%), Postives = 97/198 (48.99%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQ 798 +Y N+ FS E K LF G + + + K GK++ F FV + E A AV++ + +E++G+ I V A+K KK ++ L++ NL + S L E F F ++S V G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+ DV S E++ + +Q Sbjct: 234 VYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKP-FGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRK-DVRRSQLEQQIQARNQ 429
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 87.4261 bits (215), Expect = 1.499e-16 Identity = 58/201 (28.86%), Postives = 98/201 (48.76%), Query Frame = 1 Query: 181 QTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEV-SGRIIRVEFAKKFKKPRPQRSASAPARETQHK---------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 + + E +K + +YV N F ++K F P G + +++ + GK++ F FV + E A+AAV + +++ G+ + V A+ KK Q+ E + K LYV NL + LR FS N S+KV+ + EGRS G+GFV F EA A++ L+G+ + +PL + Q+ ++ Sbjct: 170 EREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYV--ARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTD-EEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEE 367 HSP 2 Score: 71.633 bits (174), Expect = 8.514e-12 Identity = 45/196 (22.96%), Postives = 96/196 (48.98%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKEL-MGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 810 +++ NL + I + F+ G ++ ++ + G ++ + FV + E A ++++ + ++G+ + + KF + + + +YV N + L+EFF + ++S V +G+S G+GFV+F T E AEAA+ +L+GK++ G+ L + QK + + K + + + + ES Sbjct: 92 VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP-YGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHES 283 The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 93
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bpback to top |