DY306149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 5.333e-14 Identity = 58/201 (28.86%), Postives = 90/201 (44.78%), Query Frame = 1 Query: 178 VQTKPEQTQKQNIRRK---IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750 V K Q++ + ++ K +YV N+ S E + LF G + + K GK R F FV A AV++ + E G+ + V A+K KK A+ L+V NL + L+E F A F ++S V G S G+GFV F+T EEA AI+ + + + G+PL + Q+ + Sbjct: 202 VSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEF-APFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKE 401
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 78.5666 bits (192), Expect = 6.965e-14 Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750 +YV N+ + + + LFA G +V + K GK + F FV E+A AV + E++G + V A+K KK A+ L+V NL V L E F A + ++S V + G+S G+GFV F+T EEA AI+ + + + G+PL + Q+ D Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401 HSP 2 Score: 72.7886 bits (177), Expect = 3.822e-12 Identity = 64/256 (25.00%), Postives = 120/256 (46.88%), Query Frame = 1 Query: 163 LQDTTVQ--TKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL----RLKFGQKNDDVSESNKE---------EEDVSEDQSAES*LFQFFGGLQNNSAIKIRHGKLYG 882 +QD Q T E +N +YV +L S S A + ++F+P G+V + + + K + +A+V E + A+ Q + + GR+ R+ ++++ R + S + +++ NL + + L + FS + +SSK+ + N G+S G+GFV F + A+ AI +L+G L G+ + L +++ + E+ + +++Q E LF FG + + S K GKL G Sbjct: 17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE--LFAKFGPIVSASLEKDADGKLKG 260
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 9.097e-14 Identity = 47/181 (25.97%), Postives = 95/181 (52.49%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 747 +Y+ N +K++F+ G + V+++ GK++ F FV+ S E A+ AV + + ++++G++I V A+K + + + + + KLY+ NL + LR FS +F + S+V EG+S G+G + F++ E+A A++ ++G+ L +PL + Q++ Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFS-SFGSI-SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH 370
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.188e-13 Identity = 55/196 (28.06%), Postives = 95/196 (48.47%), Query Frame = 1 Query: 187 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQH------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 K ++ + + +Y+ NL S ++ FA G +V + I K + R +AFV +PE+A+ A + + + + V A KK ++ + R E Q +YV N++ V LR+ FS S+K++ + +G+S G+GFV F+T EEA A+ + G+ G+PL + QK +D Sbjct: 190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384 HSP 2 Score: 70.8626 bits (172), Expect = 1.452e-11 Identity = 50/185 (27.03%), Postives = 89/185 (48.11%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 777 ++V NLP S + A ++++F G +V ++ + GK+R + FV + A AA+ ++ V+ + I V +F KK + +P+ E LY+ NL V LRE F A F + S + + GY FV+F E+A A +++G + + L + QK + + +E+ Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPE--------EKYTNLYMKNLDADVSEDLLREKF-AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.552e-13 Identity = 55/208 (26.44%), Postives = 103/208 (49.52%), Query Frame = 1 Query: 121 NFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735 N PT N +T+ + + + E + ++ + + V LP + + E+K+LF G + ++++ K G++ + FV P++A+ A+N + + + I+V +A R +SA R+ LYVS L + L + FS ++S+++ + G S G GF+ F + EAE AI L+G++ G P+ +KF Sbjct: 36 NGPTCNNTANCPNTINNCS--SPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 230
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.647e-13 Identity = 52/182 (28.57%), Postives = 85/182 (46.70%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750 IYV N+ + E + LF+ G +V + K GK + F FV A AV + + +E + + V E A++ KK Q A+ L++ NL + L+E F A + ++S V EG S G+GFV F++ EEA A++ + + + G+PL + Q+ D Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEF-APYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKD 413
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.457e-13 Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741 ++V N+ ++K LF G V++I+ GK++ F FV + E AQ AV + + G+++ V E ++F++ R + + P +Y+ NL + L+E FS+ + +KV+ E +G+ G+G V F++ EEA A+ ++G+ + +PL + GQ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG----VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 4.515e-13 Identity = 48/193 (24.87%), Postives = 93/193 (48.19%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804 +++ NL + + + FA G ++ ++ + + G ++ + FV + E A A+ + ++ + + V + KK R + A T +YV N+S + R+ F A + V+S + +EG+S G+GFV+F T E A A+ L+GKE G+ L + QK + E ++ + + + A Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIP-KKDRQSKFEEMKANFTN--IYVKNISLEATDEEFRDLF-AKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 343
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 4.515e-13 Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741 ++V N+ ++K LF G V++I+ GK++ F FV + E AQ AV + + G+++ V E ++F++ R + + P +Y+ NL + L+E FS+ + +KV+ E +G+ G+G V F++ EEA A+ ++G+ + +PL + GQ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG----VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 4.515e-13 Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741 ++V N+ ++K LF G V++I+ GK++ F FV + E AQ AV + + G+++ V E ++F++ R + + P +Y+ NL + L+E FS+ + +KV+ E +G+ G+G V F++ EEA A+ ++G+ + +PL + GQ Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG----VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377 The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 93
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bpback to top |