DY306149

Overview
NameDY306149
Unique NameDY306149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1055
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.333e-14
Identity = 58/201 (28.86%), Postives = 90/201 (44.78%), Query Frame = 1
Query:  178 VQTKPEQTQKQNIRRK---IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750
            V  K  Q++ + ++ K   +YV N+    S  E + LF   G +    + K   GK R F FV       A  AV++ +  E  G+ + V  A+K        KK          A+     L+V NL   +    L+E F A F  ++S  V     G S G+GFV F+T EEA  AI+  + + + G+PL +   Q+ +
Sbjct:  202 VSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEF-APFGTITSAKVMRDETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKE 401          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 78.5666 bits (192), Expect = 6.965e-14
Identity = 55/182 (30.22%), Postives = 85/182 (46.70%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750
            +YV N+    +  + + LFA  G +V   + K   GK + F FV     E+A  AV   +  E++G  + V  A+K        KK          A+     L+V NL   V    L E F A +  ++S  V  +  G+S G+GFV F+T EEA  AI+  + + + G+PL +   Q+ D
Sbjct:  221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401          

HSP 2 Score: 72.7886 bits (177), Expect = 3.822e-12
Identity = 64/256 (25.00%), Postives = 120/256 (46.88%), Query Frame = 1
Query:  163 LQDTTVQ--TKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPL----RLKFGQKNDDVSESNKE---------EEDVSEDQSAES*LFQFFGGLQNNSAIKIRHGKLYG 882
            +QD   Q  T  E    +N    +YV +L  S S A + ++F+P G+V  + + +    K +  +A+V     E  + A+ Q +   + GR+ R+ ++++    R + S +         +++ NL   + +  L + FS   + +SSK+  + N G+S G+GFV F  +  A+ AI +L+G  L G+ +     L   +++  + E+              + +++Q  E  LF  FG + + S  K   GKL G
Sbjct:   17 IQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGN---------IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQE--LFAKFGPIVSASLEKDADGKLKG 260          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.097e-14
Identity = 47/181 (25.97%), Postives = 95/181 (52.49%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN 747
            +Y+ N         +K++F+  G  + V+++    GK++ F FV+  S E A+ AV + + ++++G++I V  A+K  + + +        + +        KLY+ NL   +    LR  FS +F  + S+V     EG+S G+G + F++ E+A  A++ ++G+ L  +PL +   Q++
Sbjct:  192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFS-SFGSI-SRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH 370          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.188e-13
Identity = 55/196 (28.06%), Postives = 95/196 (48.47%), Query Frame = 1
Query:  187 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQH------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            K ++ + +     +Y+ NL    S   ++  FA  G +V + I K +    R +AFV   +PE+A+ A    +  +   + + V  A KK ++ +  R       E Q        +YV N++  V    LR+ FS      S+K++ +  +G+S G+GFV F+T EEA  A+ +  G+   G+PL +   QK +D
Sbjct:  190 KTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384          

HSP 2 Score: 70.8626 bits (172), Expect = 1.452e-11
Identity = 50/185 (27.03%), Postives = 89/185 (48.11%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEE 777
            ++V NLP S + A ++++F   G +V  ++   + GK+R + FV     + A AA+   ++  V+ + I V +F KK  + +P+        E    LY+ NL   V    LRE F A F  + S  + +       GY FV+F   E+A  A  +++G +   + L +   QK  +  +  +E+
Sbjct:  114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPE--------EKYTNLYMKNLDADVSEDLLREKF-AEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQ 289          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.552e-13
Identity = 55/208 (26.44%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  121 NFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            N PT N      +T+ + +  +  E +  ++ +  + V  LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   36 NGPTCNNTANCPNTINNCS--SPVESSNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 230          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.647e-13
Identity = 52/182 (28.57%), Postives = 85/182 (46.70%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750
            IYV N+    +  E + LF+  G +V   + K   GK + F FV       A  AV + + +E   + + V       E A++ KK   Q      A+     L++ NL   +    L+E F A +  ++S  V    EG S G+GFV F++ EEA  A++  + + + G+PL +   Q+ D
Sbjct:  233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEF-APYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKD 413          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.457e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG----VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.515e-13
Identity = 48/193 (24.87%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V +    KK R  +     A  T   +YV N+S +      R+ F A +  V+S  +   +EG+S G+GFV+F T E A  A+  L+GKE  G+ L +   QK  +  E  ++  + +  + A
Sbjct:  155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIP-KKDRQSKFEEMKANFTN--IYVKNISLEATDEEFRDLF-AKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSYEAARLEKA 343          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.515e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG----VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.515e-13
Identity = 48/183 (26.23%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            ++V N+       ++K LF   G    V++I+   GK++ F FV   + E AQ AV     + + G+++ V           E  ++F++ R +  +  P       +Y+ NL   +    L+E FS+  +   +KV+ E  +G+  G+G V F++ EEA  A+  ++G+ +  +PL +  GQ
Sbjct:  201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPG----VPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGK--GFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377          
The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
PABP_ASHGO5.333e-1428.86Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_YEAST6.965e-1430.22Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN9.097e-1425.97Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABPX_ARATH1.188e-1328.06Probable polyadenylate-binding protein At2g36660 O... [more]
ELAV2_XENTR1.552e-1326.44ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]
PABP_KLULA2.647e-1328.57Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_MACMU3.457e-1326.23Polyadenylate-binding protein 5 OS=Macaca mulatta ... [more]
PABP_CHAGB4.515e-1324.87Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_PONPY4.515e-1326.23Polyadenylate-binding protein 5 OS=Pongo pygmaeus ... [more]
PABP5_PANTR4.515e-1326.23Polyadenylate-binding protein 5 OS=Pan troglodytes... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3DA11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bp
GCAGCAGCAACGTCAATCTTCTTAACCAACTACCCTTTTTCGTTTTCGTG
CTTATTTCCCAAACTACCGCACTGTATAAAGCTCCTCCATTCTTCCAATT
CTACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAA
GTATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAAC
ACAGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGT
CTTTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTT
GTAGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGC
ATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAAT
TCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAG
AAATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGA
AACACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTA
CTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAG
GTTGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTC
ATTTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCA
AGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGAT
GATGTATCAGAGAGTAACAAGGAAGAGGAAGATGTATCTGAGGATCAATC
TGCAGAGTCATAGCTATTCCAATTTTTTGGTGGTTTGCAGAATAACAGCG
CCATCAAAATCAGACACGGTAAGCTTTATGGCATCCTCCATTAAAGTGAT
GGAAGACATTCTCCTTGGATCAATCATTTTTGCCTTCACTTTCCTTTTCC
TTTTTTCCCAGGGAAAAGGCTTAATTGACAGTTCCCTTTATTCCAATTCT
AAAAAATTTCTTTCCAAAAAGAAAAGAAAATATGTTTGTATGCCTAATAA
TTTAT
back to top