DY306149

Overview
NameDY306149
Unique NameDY306149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1055
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.314e-12
Identity = 49/179 (27.37%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  208 QNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            ++ +  + V  LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.314e-12
Identity = 49/179 (27.37%), Postives = 91/179 (50.84%), Query Frame = 1
Query:  208 QNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            ++ +  + V  LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.716e-12
Identity = 52/179 (29.05%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK----NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP--QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFE--SNEGRSAGYGFVSFATKEEAEAAISSL-DGKELMGRPLRLKF 735
            +++ NL +  +  ++K +F+  GTV    I K K       +  F FV    PE+AQ A+ Q     V G  + V  +++  KP     R    P ++T  K+ V N+ ++  S  +RE FS  F  + +  + +  +  G   G+GFV F TK++A+ A ++L     L GR L L++
Sbjct:  732 LFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFS-TFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEW 909          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 2.241e-12
Identity = 48/176 (27.27%), Postives = 89/176 (50.57%), Query Frame = 1
Query:  217 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            +  + V  LP + +  E K+LF   G +   ++++ K  G++  + FV  + P +A  A+N  +  ++  + I+V +A         R +SA  R+    LYVS L   +    + + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++ +G   P+ +KF
Sbjct:   38 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKF 202          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.241e-12
Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = 1
Query:  241 LPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            LP + +  E+K+LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKF 202          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.926e-12
Identity = 47/174 (27.01%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            + + + NL +S +   ++ +F        +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  488 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648          

HSP 2 Score: 70.8626 bits (172), Expect = 1.452e-11
Identity = 56/225 (24.89%), Postives = 107/225 (47.56%), Query Frame = 1
Query:  187 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSESNKEE----EDVSEDQSAES*LFQFFGGLQ 840
            K + ++K+   R +   NLP+  +  E+K +F     +  V     K GK++  A++   +  +A+    +    E+ GR I + +  +  + +  R         + K L +SNLS+      L+E F  A F  V      ++  G+S GY F+ FA+ E+A+ A++S + +E+ GR +RL+  G +    + S   +    + +SED + E+    F G ++
Sbjct:  384 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVR 599          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.926e-12
Identity = 47/174 (27.01%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            + + + NL +S +   ++ +F        +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  487 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647          

HSP 2 Score: 70.8626 bits (172), Expect = 1.452e-11
Identity = 56/225 (24.89%), Postives = 107/225 (47.56%), Query Frame = 1
Query:  187 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSESNKEE----EDVSEDQSAES*LFQFFGGLQ 840
            K + ++K+   R +   NLP+  +  E+K +F     +  V     K GK++  A++   +  +A+    +    E+ GR I + +  +  + +  R         + K L +SNLS+      L+E F  A F  V      ++  G+S GY F+ FA+ E+A+ A++S + +E+ GR +RL+  G +    + S   +    + +SED + E+    F G ++
Sbjct:  383 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVR 598          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.926e-12
Identity = 47/174 (27.01%), Postives = 95/174 (54.60%), Query Frame = 1
Query:  220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            + + + NL +S +   ++ +F        +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  486 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646          

HSP 2 Score: 70.8626 bits (172), Expect = 1.452e-11
Identity = 56/225 (24.89%), Postives = 107/225 (47.56%), Query Frame = 1
Query:  187 KPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFF-SANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF-GQKNDDVSESNKEE----EDVSEDQSAES*LFQFFGGLQ 840
            K + ++K+   R +   NLP+  +  E+K +F     +  V     K GK++  A++   +  +A+    +    E+ GR I + +  +  + +  R         + K L +SNLS+      L+E F  A F  V      ++  G+S GY F+ FA+ E+A+ A++S + +E+ GR +RL+  G +    + S   +    + +SED + E+    F G ++
Sbjct:  382 KGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLVS----KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKVP-----QNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVR 597          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.926e-12
Identity = 58/217 (26.73%), Postives = 101/217 (46.54%), Query Frame = 1
Query:   94 SNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            SN   S   N P+ N   + C +   T   T   +T        + V  LP + +  E ++LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:    6 SNGPTSNTSNGPSSNN--RNCPSPMQTGAATDDSKTN-------LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 202          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.926e-12
Identity = 58/217 (26.73%), Postives = 101/217 (46.54%), Query Frame = 1
Query:   94 SNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            SN   S   N P+ N   + C +   T   T   +T        + V  LP + +  E ++LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   18 SNGPTSNTSNGPSSNN--RNCPSPMQTGAATDDSKTN-------LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 214          
The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ELAV2_MOUSE1.314e-1227.37ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN1.314e-1227.37ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
RBM19_HUMAN1.716e-1229.05Probable RNA-binding protein 19 OS=Homo sapiens GN... [more]
ELAV3_HUMAN2.241e-1227.27ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ELAV2_RAT2.241e-1228.57ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
NUCL_PONAB2.926e-1227.01Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA2.926e-1227.01Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN2.926e-1227.01Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
ELAV4_RAT2.926e-1226.73ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4... [more]
ELAV4_MOUSE2.926e-1226.73ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DA11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bp
GCAGCAGCAACGTCAATCTTCTTAACCAACTACCCTTTTTCGTTTTCGTG
CTTATTTCCCAAACTACCGCACTGTATAAAGCTCCTCCATTCTTCCAATT
CTACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAA
GTATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAAC
ACAGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGT
CTTTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTT
GTAGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGC
ATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAAT
TCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAG
AAATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGA
AACACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTA
CTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAG
GTTGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTC
ATTTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCA
AGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGAT
GATGTATCAGAGAGTAACAAGGAAGAGGAAGATGTATCTGAGGATCAATC
TGCAGAGTCATAGCTATTCCAATTTTTTGGTGGTTTGCAGAATAACAGCG
CCATCAAAATCAGACACGGTAAGCTTTATGGCATCCTCCATTAAAGTGAT
GGAAGACATTCTCCTTGGATCAATCATTTTTGCCTTCACTTTCCTTTTCC
TTTTTTCCCAGGGAAAAGGCTTAATTGACAGTTCCCTTTATTCCAATTCT
AAAAAATTTCTTTCCAAAAAGAAAAGAAAATATGTTTGTATGCCTAATAA
TTTAT
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