DY306149

Overview
NameDY306149
Unique NameDY306149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1055
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.926e-12
Identity = 58/217 (26.73%), Postives = 101/217 (46.54%), Query Frame = 1
Query:   94 SNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            SN   S   N P+ N   + C +   T   T   +T        + V  LP + +  E ++LF   G +   ++++ K  G++  + FV    P++A+ A+N  +   +  + I+V +A         R +SA  R+    LYVS L   +    L + FS     ++S+++ +   G S G GF+ F  + EAE AI  L+G++  G   P+ +KF
Sbjct:   13 SNGPTSNTSNGPSSNN--RNCPSPMQTGATTDDSKTN-------LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA---------RPSSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 209          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_NEOFI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.822e-12
Identity = 44/193 (22.80%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+  +V     R+ F   F  ++S  +    EG+S G+GFV+F+T + A+AA+  ++ KE+ G+ L +   QK  +  E  +++ + +  + A
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNIDQEVTDEEFRKMFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 330          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.822e-12
Identity = 44/193 (22.80%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+  +V     R+ F   F  ++S  +    EG+S G+GFV+F+T + A+AA+  ++ KE+ G+ L +   QK  +  E  +++ + +  + A
Sbjct:  142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNIDQEVTDEEFRKMFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 330          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.991e-12
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK----NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKP--RPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSA--GYGFVSFATKEEAEAAISSL-DGKELMGRPLRLKF 735
            +++ NL +S +   +K +F+  G +    I K K       +  F FV    PE+AQ A+ Q     V G  + V  +++  KP     R    P ++T  K+ V N+ ++     +RE FS  F  + +  + +   G  A  G+GFV F TK++A+ A ++L     L GR L L++
Sbjct:  724 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFS-TFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 901          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.519e-12
Identity = 43/193 (22.28%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ NL  ++     R+ F   F  ++S  +    EG+S G+GFV+++T + A+AA+  ++ KE+ G+ L +   QK  +  E  +++ + +  + A
Sbjct:  138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNLDQEISEEEFRQMFE-KFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQYEAARLEKA 326          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: GAR2_SCHPO (Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 6.519e-12
Identity = 49/191 (25.65%), Postives = 90/191 (47.12%), Query Frame = 1
Query:  184 TKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKH-KGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAK-KFKKPRPQRSASA-----PARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKF 735
            TKP Q   +     ++V  L W+     +   F   GT+V   +I   + G+++ + +V   +PE A+AAV    T+E+ GR++ ++ +  +   P+P     A        E    ++V NLS+      L   F    +  S ++  +   GR  G+G+V+F+  + A+  +  ++G  + GRP RL F
Sbjct:  253 TKPSQDSNETCT--VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDF 440          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.112e-11
Identity = 44/193 (22.80%), Postives = 94/193 (48.70%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+  +V     R+ F   F  ++S  +   +EG+S G+GFV+F+T E A+AA+  ++ KE+  + L +   QK  +  E  +++ + +  + A
Sbjct:  132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--IYIKNIDPEVEDEEFRKLFE-KFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKA 320          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.112e-11
Identity = 45/193 (23.32%), Postives = 92/193 (47.67%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ N+   V     RE F   F  ++S  +    EG+S G+GFV+F+T E A+AA+  ++ KE+  + L +   QK  +  E  +++ + +  + A
Sbjct:  139 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNIDQDVTEEEFRELFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQYEAARLEKA 327          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.112e-11
Identity = 44/193 (22.80%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +Y+ NL  ++     R+ F   F  ++S  +    EG+S G+GFV+F+T E A+AA+  ++ KE+  + L +   QK  +  E  +++ + +  + A
Sbjct:  144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHIS-KKDRQSKFEEMKANFTN--VYIKNLDSEIDDDEFRKMFE-KFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKA 332          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: NUCL_RAT (Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.112e-11
Identity = 47/174 (27.01%), Postives = 93/174 (53.45%), Query Frame = 1
Query:  220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 741
            + + + NL +S +   ++ +F        +++ ++  GK++ +AF+  AS E+A+ A+N  +  E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V +   G S G+GFV F ++E+A+AA  +++  E+ G  + L + +
Sbjct:  489 KTLVLSNLSYSATEETLQEVFEKA---TFIKVPQNPHGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 649          
The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ELAV4_HUMAN2.926e-1226.73ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1... [more]
PABP_NEOFI3.822e-1222.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPFU3.822e-1222.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBM19_MOUSE4.991e-1228.49Probable RNA-binding protein 19 OS=Mus musculus GN... [more]
PABP_ASPTN6.519e-1222.28Polyadenylate-binding protein, cytoplasmic and nuc... [more]
GAR2_SCHPO6.519e-1225.65Protein gar2 OS=Schizosaccharomyces pombe GN=gar2 ... [more]
PABP_EMENI1.112e-1122.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPOR1.112e-1123.32Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC1.112e-1122.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NUCL_RAT1.112e-1127.01Nucleolin OS=Rattus norvegicus GN=Ncl PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DA11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bp
GCAGCAGCAACGTCAATCTTCTTAACCAACTACCCTTTTTCGTTTTCGTG
CTTATTTCCCAAACTACCGCACTGTATAAAGCTCCTCCATTCTTCCAATT
CTACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAA
GTATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAAC
ACAGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGT
CTTTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTT
GTAGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGC
ATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAAT
TCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAG
AAATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGA
AACACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTA
CTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAG
GTTGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTC
ATTTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCA
AGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGAT
GATGTATCAGAGAGTAACAAGGAAGAGGAAGATGTATCTGAGGATCAATC
TGCAGAGTCATAGCTATTCCAATTTTTTGGTGGTTTGCAGAATAACAGCG
CCATCAAAATCAGACACGGTAAGCTTTATGGCATCCTCCATTAAAGTGAT
GGAAGACATTCTCCTTGGATCAATCATTTTTGCCTTCACTTTCCTTTTCC
TTTTTTCCCAGGGAAAAGGCTTAATTGACAGTTCCCTTTATTCCAATTCT
AAAAAATTTCTTTCCAAAAAGAAAAGAAAATATGTTTGTATGCCTAATAA
TTTAT
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