DY306149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.897e-11 Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = 1 Query: 217 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735 + + V LP + + E K+LF G + ++++ K G++ + FV P +A A+N + ++ + I+V +A R +SA R+ LYVS+L + + + FS ++S+++ + G S G GF+ F + EAE AI L+G++ +G P+ +KF Sbjct: 34 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKF 199
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 2.477e-11 Identity = 63/243 (25.93%), Postives = 108/243 (44.44%), Query Frame = 1 Query: 64 LPHCIKLLHSSNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP-------QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 768 LPH IKL + + S P R V + + T + + +T ++ L +++ F+ G V DV +I + + +R A+V + A+ Q V G I V+ A + +K R Q+ ++ P R LYV +L + + LR F S +++ +S GRS GYGF++F+ E A+ A+ L+G EL GRP+++ + D S ++ Sbjct: 114 LPHSIKLSRRRSRSKS-----PFRKDKSPVREPIDNLTPEERDART--------VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMR-----LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSAS 336
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 3.235e-11 Identity = 53/209 (25.36%), Postives = 96/209 (45.93%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQFDTQE---VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK----------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 810 ++V LP S +++ LF+ G V ++ KG K R F +VT + E+ Q A+ + T E ++ + + + K K+ ++ P +E + K L + NLS+K L+ F A F V + +G+ G+GFV F EA A+ ++ KE+ GR + + + D ++ + + E++S ES Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVF-AQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDT-QSVSAIGEEKSHES 212
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 4.226e-11 Identity = 53/209 (25.36%), Postives = 102/209 (48.80%), Query Frame = 1 Query: 199 TQKQNIRRKIYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 792 +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + FV+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S K + S + F+P + E GY FV F+T E A AI S++G + G ++ +G+++ D+++ N ++ D S+ Sbjct: 105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 4.226e-11 Identity = 57/216 (26.39%), Postives = 101/216 (46.76%), Query Frame = 1 Query: 220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE------DVSEDQSAES*LFQFFGGL 837 + +YV NL + A I LF+ G + ++I G N + FV A AA+ + +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++ F+ ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + + +S E D +QS+ S + GG+ Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: YOW4_SCHPO (Uncharacterized RNA-binding protein C1861.04c OS=Schizosaccharomyces pombe GN=SPBC1861.04c PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 5.519e-11 Identity = 51/191 (26.70%), Postives = 88/191 (46.07%), Query Frame = 1 Query: 211 NIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEED 783 ++ +YV N P ++ +I LF+ G VVDV + NR F +V M P+EA A+ I+V + ++ P+ A RE LYV+N+ +KV + FF S ++ N+ + G+G+V T ++AE A+S+ GK+L R L + + + + ++ D Sbjct: 663 HVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVFISDPLRR-TPRSGAVYEGRE----LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHK--GFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRESLEKTRVSSND 845
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 5.519e-11 Identity = 54/219 (24.66%), Postives = 100/219 (45.66%), Query Frame = 1 Query: 157 STLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS--------WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDV 786 S +DT+ T TQ+ ++V +L + +IK FAP G + D ++K GK++ + FV+ + +A+ A+ Q Q + GR IR +A + K P P+ + + ++ + VS S V S + F+P + E GY FV F++ E A AI S++G + G ++ +G++ D+ +++ + Sbjct: 86 SQKKDTSSSTVVS-TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 300 HSP 2 Score: 68.5514 bits (166), Expect = 7.208e-11 Identity = 51/189 (26.98%), Postives = 91/189 (48.15%), Query Frame = 1 Query: 220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 774 + +YV NL + A I LF+ G + ++I G N + FV A AA+ + +++ G+ ++V +A + S+S + R H ++V +LS ++ + ++ F+ ++VV + G+S GYGFVSF K +AE AI + G+ L GR +R + + +S E Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 194
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: YKX5_SCHPO (Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe GN=SPAC328.05 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 7.208e-11 Identity = 53/212 (25.00%), Postives = 99/212 (46.70%), Query Frame = 1 Query: 160 TLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV----EFAKKFKKPRPQRSASAPARETQ--HKLYVSNLS---------------WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 732 T +D + + TQ++ R++YV NL + E+K G V++ EI+ G ++ A + ++ EEA+ A+ Q+ GR++ + E +F SAS+ ++++ +L+V N+S + VR L++ F + + + + + EGRS G G V ++ +EA AI L + MGR L ++ Sbjct: 49 TERDPHLGNGQKYTQQE---RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQM-NQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 256
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 7.208e-11 Identity = 53/209 (25.36%), Postives = 102/209 (48.80%), Query Frame = 1 Query: 199 TQKQNIRRKIYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 792 +QK++ +VF +L + +IK+ FAP G + D ++K GK++ + FV+ + +A+ A+ Q + GR IR +A + K P P+ + ++ + + V+ S K + S + F+P + E GY FV F+T E A AI S++G + G ++ +G+++ D+++ N ++ D S+ Sbjct: 88 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 292
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 7.208e-11 Identity = 44/193 (22.80%), Postives = 89/193 (46.11%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804 +++ NL + + + FA G ++ ++ + + G ++ + FV + E A A+ + ++ + + V KK R + A T +YV N++ +V R F + SS + + G+S G+GFV+F + E+A A+ L+ KE G+ L + QK + E ++ + + + A Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIP-KKDRQSKFDEMKANFTN--IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKA 340 The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 93
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bpback to top |