DY306149

Overview
NameDY306149
Unique NameDY306149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1055
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.897e-11
Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  217 RRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGR-SAGYGFVSFATKEEAEAAISSLDGKELMG--RPLRLKF 735
            +  + V  LP + +  E K+LF   G +   ++++ K  G++  + FV    P +A  A+N  +  ++  + I+V +A         R +SA  R+    LYVS+L   +    + + FS     ++S+++ +   G  S G GF+ F  + EAE AI  L+G++ +G   P+ +KF
Sbjct:   34 KTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYA---------RPSSASIRDAN--LYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPITVKF 199          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.477e-11
Identity = 63/243 (25.93%), Postives = 108/243 (44.44%), Query Frame = 1
Query:   64 LPHCIKLLHSSNSTPSLIYNFPTRNVCLQVCSTLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGK-NRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRP-------QRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESN 768
            LPH IKL    + + S     P R     V   + + T + +  +T        ++   L       +++  F+  G V DV +I  +  + +R  A+V        + A+     Q V G  I V+ A + +K R        Q+ ++ P R     LYV +L + +    LR  F       S +++ +S  GRS GYGF++F+  E A+ A+  L+G EL GRP+++    +  D S ++
Sbjct:  114 LPHSIKLSRRRSRSKS-----PFRKDKSPVREPIDNLTPEERDART--------VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIG-LTGQRVLGVPIIVQ-ASQAEKNRAAAMANNLQKGSAGPMR-----LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSAS 336          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: RBM28_HUMAN (RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 3.235e-11
Identity = 53/209 (25.36%), Postives = 96/209 (45.93%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKN-RNFAFVTMASPEEAQAAVNQFDTQE---VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK----------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSAES 810
            ++V  LP S    +++ LF+  G V    ++  KG K  R F +VT +  E+ Q A+ +  T E   ++  + + +   K K+     ++  P +E + K          L + NLS+K     L+  F A F  V    +    +G+  G+GFV F    EA  A+  ++ KE+ GR + + +    D   ++ +    + E++S ES
Sbjct:    6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITTFEGCKINVTVAKKKLRNKTKEKGKNENSECPKKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVF-AQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDT-QSVSAIGEEKSHES 212          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.226e-11
Identity = 53/209 (25.36%), Postives = 102/209 (48.80%), Query Frame = 1
Query:  199 TQKQNIRRKIYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 792
            +QK++     +VF  +L    +  +IK+ FAP G + D  ++K    GK++ + FV+  +  +A+ A+     Q + GR IR  +A + K P P+ +     ++ + +  V+  S K        + S    +     F+P     + E       GY FV F+T E A  AI S++G  + G  ++  +G+++ D+++ N ++ D S+
Sbjct:  105 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 309          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 4.226e-11
Identity = 57/216 (26.39%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEE------DVSEDQSAES*LFQFFGGL 837
            + +YV NL    + A I  LF+  G   + ++I    G N  + FV       A AA+   + +++ G+ ++V +A      +   S+S   +  R   H  ++V +LS ++ +  ++  F+       ++VV +   G+S GYGFVSF  K +AE AI  + G+ L GR +R  +  +     +S  E        D   +QS+ S    + GG+
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGV 221          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: YOW4_SCHPO (Uncharacterized RNA-binding protein C1861.04c OS=Schizosaccharomyces pombe GN=SPBC1861.04c PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.519e-11
Identity = 51/191 (26.70%), Postives = 88/191 (46.07%), Query Frame = 1
Query:  211 NIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEED 783
            ++   +YV N P ++   +I  LF+  G VVDV     +   NR F +V M  P+EA  A+            I+V  +   ++  P+  A    RE    LYV+N+ +KV    +  FF       S ++    N+ +  G+G+V   T ++AE A+S+  GK+L  R L +   +  + + ++     D
Sbjct:  663 HVDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHKKLLEEKYPIQVFISDPLRR-TPRSGAVYEGRE----LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHK--GFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRESLEKTRVSSND 845          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.519e-11
Identity = 54/219 (24.66%), Postives = 100/219 (45.66%), Query Frame = 1
Query:  157 STLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLS--------WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDV 786
            S  +DT+  T    TQ+      ++V +L    +  +IK  FAP G + D  ++K    GK++ + FV+  +  +A+ A+ Q   Q + GR IR  +A + K P P+ +  +  ++  +   VS  S          V S    +     F+P     + E       GY FV F++ E A  AI S++G  + G  ++  +G++  D+    +++  +
Sbjct:   86 SQKKDTSSSTVVS-TQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR-KPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQ--IMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQI 300          

HSP 2 Score: 68.5514 bits (166), Expect = 7.208e-11
Identity = 51/189 (26.98%), Postives = 91/189 (48.15%), Query Frame = 1
Query:  220 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSAS---APARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKE 774
            + +YV NL    + A I  LF+  G   + ++I    G N  + FV       A AA+   + +++ G+ ++V +A      +   S+S   +  R   H  ++V +LS ++ +  ++  F+       ++VV +   G+S GYGFVSF  K +AE AI  + G+ L GR +R  +  +     +S  E
Sbjct:    7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAG-NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE 194          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: YKX5_SCHPO (Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe GN=SPAC328.05 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 7.208e-11
Identity = 53/212 (25.00%), Postives = 99/212 (46.70%), Query Frame = 1
Query:  160 TLQDTTVQTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV----EFAKKFKKPRPQRSASAPARETQ--HKLYVSNLS---------------WKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLK 732
            T +D  +    + TQ++   R++YV NL +     E+K      G V++ EI+    G ++  A +  ++ EEA+ A+     Q+  GR++ +    E   +F       SAS+  ++++   +L+V N+S               + VR   L++ F    + + + +   + EGRS G G V  ++ +EA  AI  L   + MGR L ++
Sbjct:   49 TERDPHLGNGQKYTQQE---RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQM-NQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVR 256          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.208e-11
Identity = 53/209 (25.36%), Postives = 102/209 (48.80%), Query Frame = 1
Query:  199 TQKQNIRRKIYVF--NLPWSFSVAEIKNLFAPCGTVVDVEIIKHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWK--------VRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSE 792
            +QK++     +VF  +L    +  +IK+ FAP G + D  ++K    GK++ + FV+  +  +A+ A+     Q + GR IR  +A + K P P+ +     ++ + +  V+  S K        + S    +     F+P     + E       GY FV F+T E A  AI S++G  + G  ++  +G+++ D+++ N ++ D S+
Sbjct:   88 SQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATR-KPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ--IMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK-NFQQVDYSQ 292          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.208e-11
Identity = 44/193 (22.80%), Postives = 89/193 (46.11%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQSA 804
            +++ NL  +     + + FA  G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +YV N++ +V     R  F    +  SS +  +   G+S G+GFV+F + E+A  A+  L+ KE  G+ L +   QK  +  E  ++  + +  + A
Sbjct:  151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIP-KKDRQSKFDEMKANFTN--IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKA 340          
The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
ELAV3_XENTR1.897e-1127.12ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
RBM39_MOUSE2.477e-1125.93RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
RBM28_HUMAN3.235e-1125.36RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE... [more]
TIAR_MOUSE4.226e-1125.36Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIA1_HUMAN4.226e-1126.39Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
YOW4_SCHPO5.519e-1126.70Uncharacterized RNA-binding protein C1861.04c OS=S... [more]
TIA1_MOUSE5.519e-1124.66Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
YKX5_SCHPO7.208e-1125.00Uncharacterized RNA-binding protein C328.05 OS=Sch... [more]
TIAR_HUMAN7.208e-1125.36Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
PABP_MAGGR7.208e-1122.80Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DA11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bp
GCAGCAGCAACGTCAATCTTCTTAACCAACTACCCTTTTTCGTTTTCGTG
CTTATTTCCCAAACTACCGCACTGTATAAAGCTCCTCCATTCTTCCAATT
CTACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAA
GTATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAAC
ACAGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGT
CTTTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTT
GTAGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGC
ATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAAT
TCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAG
AAATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGA
AACACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTA
CTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAG
GTTGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTC
ATTTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCA
AGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGAT
GATGTATCAGAGAGTAACAAGGAAGAGGAAGATGTATCTGAGGATCAATC
TGCAGAGTCATAGCTATTCCAATTTTTTGGTGGTTTGCAGAATAACAGCG
CCATCAAAATCAGACACGGTAAGCTTTATGGCATCCTCCATTAAAGTGAT
GGAAGACATTCTCCTTGGATCAATCATTTTTGCCTTCACTTTCCTTTTCC
TTTTTTCCCAGGGAAAAGGCTTAATTGACAGTTCCCTTTATTCCAATTCT
AAAAAATTTCTTTCCAAAAAGAAAAGAAAATATGTTTGTATGCCTAATAA
TTTAT
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