DY306122

Overview
NameDY306122
Unique NameDY306122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROM3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=ispH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.452e-14
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  RGI S+ ID+ +RIG  N I +K +  +L  + N+LP G + +GITSGASTPD+ VE V++K+ ++
Sbjct:  322 HLQEIAISRGIRSFHIDTPERIGDNNSIQHKPLGEDLFIESNFLPAGSVNVGITSGASTPDRVVEHVIQKLIDL 395          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_SYNSC (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9605) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  RGI S+ ID+ +RI  G N I +K +  +L  + ++LP G + +GITSGASTPD+AVEEV++K+ ++
Sbjct:  322 HLQEIAVSRGIRSFHIDTPERIDVGSNSIEHKPLAADLCREGDFLPEGPVRVGITSGASTPDRAVEEVIEKLMQL 396          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9311) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 37/74 (50.00%), Postives = 53/74 (71.62%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  RGI S+ ID+ +RI   N I +K +  EL  +E +LP+G +T+GITSGASTPD+ VE V++++  +
Sbjct:  322 HLQEIAVSRGIRSFHIDTPERIHTDNSIEHKPLGEELTVEELFLPSGPVTVGITSGASTPDRVVEHVIQRLIAL 395          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROMT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL2A) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYK-LMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  RGI S+ ID+ +RIG   N I +  L  GEL+ +EN+L NG I++GITSGASTPD+ VE+V+ K+ +I
Sbjct:  322 HLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain NATL1A) GN=ispH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYK-LMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  RGI S+ ID+ +RIG   N I +  L  GEL+ +EN+L NG I++GITSGASTPD+ VE+V+ K+ +I
Sbjct:  322 HLQEIAISRGIRSFHIDTPERIGEETNTITHMPLEGGELLTEENFLQNGNISVGITSGASTPDRVVEDVIHKLMKI 397          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROMP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 37/77 (48.05%), Postives = 56/77 (72.73%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKR 229
            HLQEIA ++ I S+ ID+ +RI    N I +K +  E+V K+N++P+G+I +GITSGASTPDK V +V++K+  I +
Sbjct:  322 HLQEIAINKNISSFHIDTPERISVKENSILHKPLKSEMVLKKNFIPDGEIKVGITSGASTPDKIVADVIEKLIAITK 398          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_SYNPX (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain WH8102) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.969e-13
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRI-GPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 214
            HLQEIA  RGI S+ ID+  R+    N I +K ++  L  + N+LP G +T+GITSGASTPD+AVEEV++K+
Sbjct:  322 HLQEIALSRGIRSFHIDTPDRLDAQANAIEHKPLNENLRLESNFLPAGPVTVGITSGASTPDRAVEEVIEKL 393          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROMS (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain AS9601) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.969e-13
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  + I S+ ID+ +RI    N I +K +  EL  K+N+LP+G+I +GITSGASTPDK V +V++K+ +I
Sbjct:  322 HLQEIAITKNISSFHIDTPERISVKENSIFHKPLGSELELKKNFLPSGKINVGITSGASTPDKVVADVIEKLIDI 396          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROMA (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus GN=ispH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGP-GNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 241
            HLQEIA  +GI S+ ID+ +RIG   N I +K +  +L  + N+LP G+I +GITSGASTPD+ VE V++K+  +   + +
Sbjct:  322 HLQEIALAKGIRSFHIDTPERIGEIENTITHKPLGDDLRVESNFLPEGKINVGITSGASTPDRIVEHVIQKLINLSERKLM 402          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROM5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9515) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA    I S+ ID   RI    N I +K +  EL+ K+N++P+G+I +GITSGASTPDK V +V++K+  I
Sbjct:  322 HLQEIAISNNIESFHIDISDRISVENNSICHKPLESELILKKNFIPDGKIKVGITSGASTPDKIVADVIEKLIAI 396          
The following BLAST results are available for this feature:
BLAST of DY306122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM31.452e-1450.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNSC7.207e-1450.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS37.207e-1450.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMT7.207e-1455.264-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM17.207e-1455.264-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMP3.577e-1348.054-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNPX7.969e-1352.784-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMS7.969e-1350.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMA1.041e-1245.684-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM51.041e-1249.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306122 ID=DY306122; Name=DY306122; organism=Citrus sinensis; type=EST; length=393bp
ACACCTTCAAGAGATTGCAGAAGACCGTGGAATTCCCTCATACTGGATCG
ATAGTGAGAAGAGAATAGGCCCCGGAAACAAAATAGCATATAAATTGATG
CATGGTGAGCTGGTGGAGAAAGAAAATTGGCTGCCGAACGGCCAGATCAC
AATCGGTATAACATCCGGTGCCTCCACCCCAGATAAGGCTGTTGAAGAGG
TCCTTAAAAAGGTATTCGAGATCAAGCGTGAAGAAGCCTTGCAATTAGCG
TAAACTGAGGTCCAAACATACACATTATCAATAAATTTCGATGTGATTGT
ATCACTAGATATTGTAAAATTATAAACACAGCCCTCTGTCGGGTCTTTTA
TTAGTGCCCATCTAATCTGAAATTTATATTTTTGTGTAAAAAA
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