DY306122

Overview
NameDY306122
Unique NameDY306122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROM0 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9301) GN=ispH PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  + I S+ ID+ +RI    N I +K +  EL  K N+LP+G+I +GITSGASTPDK V +V++K+ +I
Sbjct:  322 HLQEIAITKNISSFHIDTPERISVKENSIFHKPLGSELELKNNFLPSGKINVGITSGASTPDKVVADVIEKLIDI 396          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_SYNS9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain CC9902) GN=ispH PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.746e-12
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIGPG-NKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEI 223
            HLQEIA  RGI S+ ID+  RI    N I +K +  +L   + +LP G +T+GITSGASTPD+AVE V++K+  +
Sbjct:  322 HLQEIAVSRGIRSFHIDTPDRIDETTNSIEHKPLSEDLKRDQVFLPAGPVTVGITSGASTPDRAVEAVIEKLMRL 396          
BLAST of DY306122 vs. ExPASy Swiss-Prot
Match: ISPH_PROM9 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9312) GN=ispH PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 2
Query:    2 HLQEIAEDRGIPSYWIDSEKRIG-PGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKV 214
            HLQEIA  + I S+ ID+ +RI    N I +K +  +L  K N+LP+G I +GITSGASTPDK V +V++K+
Sbjct:  322 HLQEIAITKNITSFHIDTPERISVEENSILHKPLGLDLELKNNFLPSGNINVGITSGASTPDKVVADVIEKL 393          
The following BLAST results are available for this feature:
BLAST of DY306122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_PROM01.041e-1250.674-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNS96.746e-1249.334-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM93.348e-1150.004-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CF04RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306122 ID=DY306122; Name=DY306122; organism=Citrus sinensis; type=EST; length=393bp
ACACCTTCAAGAGATTGCAGAAGACCGTGGAATTCCCTCATACTGGATCG
ATAGTGAGAAGAGAATAGGCCCCGGAAACAAAATAGCATATAAATTGATG
CATGGTGAGCTGGTGGAGAAAGAAAATTGGCTGCCGAACGGCCAGATCAC
AATCGGTATAACATCCGGTGCCTCCACCCCAGATAAGGCTGTTGAAGAGG
TCCTTAAAAAGGTATTCGAGATCAAGCGTGAAGAAGCCTTGCAATTAGCG
TAAACTGAGGTCCAAACATACACATTATCAATAAATTTCGATGTGATTGT
ATCACTAGATATTGTAAAATTATAAACACAGCCCTCTGTCGGGTCTTTTA
TTAGTGCCCATCTAATCTGAAATTTATATTTTTGTGTAAAAAA
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