EY702735

Overview
NameEY702735
Unique NameEY702735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:557..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.848e-36
Identity = 79/197 (40.10%), Postives = 119/197 (60.41%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            +KK  ++EI + G  I E+++YA     KQ+ +  VFQ+ E++D IGVTKGKG++G V RWGV  +  +   +G+ R V  IG W P  V ++V   GQ GYH RTE NK++ K+G  G E              ITP GGF HYG+++++Y+++KG   GP KR++ LR+++  Q   + + E  I +I T+SK G
Sbjct:  154 KKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGVGRHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPE--ITYISTTSKQG 334          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.080e-35
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 591
            +KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+         D  E +ITP GGFPHYGIV+ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  157 KKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRAGEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK------LVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.411e-35
Identity = 78/195 (40.00%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 591
            +KK  +ME  + G  +  K +YA     K+I    V  + E++D+I VTKGKG +G V RWGV     K  R    R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+ G+    G       E DITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I ++   SK
Sbjct:  157 KKKPEVMEYAIGGDDVKAKFEYAKERIGKEIRASEVLHEGELLDVIAVTKGKGTQGPVKRWGVKVQFHKAQRAGKGRHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGENGKLVLNG------NEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 7.000e-35
Identity = 76/195 (38.97%), Postives = 113/195 (57.95%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 591
            +KK  +ME  + G  +  K DYA     K++    V  + E++D+I VTKGKG +G V RWG+     K  R    R V  +G WHP RV +TV +AGQ G+HHRTE NK++  +G+ G+     +   +  E +ITP GGFPHYGI++ D+LMI+G   G  KR++ +R ++     +  +E  +I +I   SK
Sbjct:  157 KKKPEVMEYAIGGDDVKAKFDYAKEKIGKELRASEVLHEGELLDVIAVTKGKGTQGPVKRWGIKIQFHKAQRAGKGRHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGENGK-----LKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.926e-34
Identity = 81/201 (40.30%), Postives = 115/201 (57.21%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 600
            G  +KK  ++EI V G ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  150 GIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.926e-34
Identity = 81/201 (40.30%), Postives = 115/201 (57.21%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 600
            G  +KK  ++EI V G ++AEK+ YA     K + ++ VF+  E ID + VTKGKG++G V RWGV  +  +   +G+ R+   IG W P RV +TV  AGQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR ++     +  L E  + +I   SK G+
Sbjct:  150 GIPKKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPVKRWGVKIQFGKHQRKGVGRQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPE--VTYISKESKQGN 334          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.320e-33
Identity = 79/201 (39.30%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 600
            G  +KK  ++EI + G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  I +I T SK G+
Sbjct:  150 GIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--IAYISTESKQGN 334          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 600
            G  +KK  ++EI + G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  150 GIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.724e-33
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 600
            G  +KK  ++EI + G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  150 GIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.252e-33
Identity = 78/201 (38.81%), Postives = 114/201 (56.72%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGV-TRLPRKTHRGL-RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGH 600
            G  +KK  ++EI + G ++AE++ YA     K + +  VF+  E+ID + +TKGKG++G V RWG+  +  +   +G+ R    IG W P RV +TV   GQ G+H RTE NK++ KLG  G E              ITP GGF +YG VK+ Y+++KG   GP KR+V LR S+     +  L E  + +I T SK G+
Sbjct:  150 GIPKKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPE--VAYISTESKQGN 334          
The following BLAST results are available for this feature:
BLAST of EY702735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_METJA4.848e-3640.1050S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_PYRKO1.080e-3540.0050S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_THEGJ1.411e-3540.0050S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_THEON7.000e-3538.9750S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_METVS5.926e-3440.3050S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA5.926e-3440.3050S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METMP1.320e-3339.3050S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM71.724e-3338.8150S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM61.724e-3338.8150S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM52.252e-3338.8150S ribosomal protein L3P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-F07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702735 ID=EY702735; Name=EY702735; organism=Citrus sinensis; type=EST; length=867bp
AAGGGTTTTTAGCAGAAGAAGGCACACCTGATGGAAATCCACGTCAATGG
TGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGC
AAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATC
GGCGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGT
TACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTA
TTGGCGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGT
CAGAATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCT
TGGCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACACGA
CTGAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTG
AAAGATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAG
GGTGGTCACTCTTCGGCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTC
TTGAAGAAATCAAAATCAAGTTCATTGATACCTCTTCCAAGTTTGGGCAT
GGCCGCTTCCAGACTACACAGGAGAAACAGAAGTACTGTGGACGCATGAA
AGCATAATTATATGCTAAAAAGTCAAGAGTTTTGCACCGTCATAGGTGAA
TCAGGCAGTCTGAATTTTATCCAGTTTGCCTATCTTGAGACAGGTTGTTG
AGCCCTGCATCAGCTGAGGTTCTTTCCATGTGTCTTTTTCTTTTCCGTAG
GTCCCTTTATTTTGTAGAAATGGGCGGGGCCTTTTCCTTTGAAACTGTTA
AATTAAAAAATTCCCAA
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