EY702735

Overview
NameEY702735
Unique NameEY702735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length867
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7013 contig Csv1_Contig7013:557..1422. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_SULIN (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            +K   L+EI + GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIG--------------DDPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_SULIM (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            +K   L+EI + GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIG--------------DDPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_SULIL (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            +K   L+EI + GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIG--------------DDPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_SULIK (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            +K   L+EI + GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIG--------------DDPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 71/197 (36.04%), Postives = 112/197 (56.85%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            +K   L+EI + GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+++  + S +     KI +++  SK G
Sbjct:  173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIG--------------DDPKEINPAGGFVRYGIVRNTYILLEGSILGSKKRPIFLREAV--RPSYVFENAPKITYVNLLSKQG 351          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26
Identity = 72/204 (35.29%), Postives = 112/204 (54.90%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDA---VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 597
            G  +K   +ME  V GGT+A+++++A    E    V A   VF+  E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +  G +                TP GGFP+YG V   Y ++KG   GP++R+V  R ++   ++ RL   + +++++ T+S  G
Sbjct:  151 GVPKKNPDVMETRVGGGTLADRLEFAADLIEDG-GVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26
Identity = 72/204 (35.29%), Postives = 112/204 (54.90%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDA---VFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL-KQTSRLALEEIKIKFIDTSSKFG 597
            G  +K   +ME  V GGT+A+++++A    E    V A   VF+  E  D  G+TKGKG +G V RWGV +   K  R    R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +  G +                TP GGFP+YG V   Y ++KG   GP++R+V  R ++   ++ RL   + +++++ T+S  G
Sbjct:  151 GVPKKNPDVMETRVGGGTLADRLEFAADLIEDG-GVHAFGDVFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRL---DPEVRYVSTASNQG 335          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.940e-26
Identity = 70/197 (35.53%), Postives = 111/197 (56.35%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            +K   L+EI + GG    ++DYA     K+I +  VF++ ++ID++GVTKGKG+ GV+ R+ V  LPR  K  +G RK+   G       S+T  + GQ G+H RTE NK++ K+G                 K+I P GGF  YGIV++ Y++++G  +G KKR + LR+ +  + S +     KI +++  S+ G
Sbjct:  173 KKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPRWHKHRKGSRKIGTRGP-SLGTPSYT-PQPGQLGFHRRTEYNKRIIKIG--------------DEPKEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPV--RPSYVFENPPKITYVNLLSQQG 351          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 7.758e-26
Identity = 68/200 (34.00%), Postives = 103/200 (51.50%), Query Frame = 1
Query:    4 GF*QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFG 597
            G  +K   +ME  ++   +  K +YA       + +  VF+   +ID   +T GKG +G   RWG+  +  K  R   LR++  +G +   RVS+ V + GQ GYH RTE NK++ K+G  G+E              +TP GGF +YG+V+ DY++IKG   GP KR++ LR  +  +  +  L E  I  I   SK G
Sbjct:  154 GVPKKTPDIMESGISARDLNTKFEYAKSILGTLVSITDVFKTGTLIDTAAITIGKGTQGPAKRWGIQLMKGKHSRQGSLRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337          
BLAST of EY702735 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 63/193 (32.64%), Postives = 107/193 (55.44%), Query Frame = 1
Query:   13 QKKAHLMEIHVNGGTIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDTTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSK 591
            +K   + +I + G  + +K++YA     K++ ++ VF++ + +D+I VTKGKG++GV+ R+ V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK + K+G                 + +   GG+  YG V    +++KG   GP+KR++ LR+++     +  +E   I++I  S K
Sbjct:  147 KKTPEIFDIPIGGSDVNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG-----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVE--GIEYISLSPK 320          
The following BLAST results are available for this feature:
BLAST of EY702735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_SULIN1.563e-2636.0450S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIM1.563e-2636.0450S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIL1.563e-2636.0450S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIK1.563e-2636.0450S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_SULIA1.563e-2636.0450S ribosomal protein L3P OS=Sulfolobus islandicus... [more]
RL3_HALSA4.548e-2635.2950S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS34.548e-2635.2950S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_SULSO5.940e-2635.5350S ribosomal protein L3P OS=Sulfolobus solfataric... [more]
RL3_METBF7.758e-2634.0050S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_NANEQ1.013e-2532.6450S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-F07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702735 ID=EY702735; Name=EY702735; organism=Citrus sinensis; type=EST; length=867bp
AAGGGTTTTTAGCAGAAGAAGGCACACCTGATGGAAATCCACGTCAATGG
TGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGC
AAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATC
GGCGTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGT
TACCCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTA
TTGGCGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGT
CAGAATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCT
TGGCAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACACGA
CTGAGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTG
AAAGATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAG
GGTGGTCACTCTTCGGCAGTCGCTTCTCAAACAGACGTCTCGTTTAGCTC
TTGAAGAAATCAAAATCAAGTTCATTGATACCTCTTCCAAGTTTGGGCAT
GGCCGCTTCCAGACTACACAGGAGAAACAGAAGTACTGTGGACGCATGAA
AGCATAATTATATGCTAAAAAGTCAAGAGTTTTGCACCGTCATAGGTGAA
TCAGGCAGTCTGAATTTTATCCAGTTTGCCTATCTTGAGACAGGTTGTTG
AGCCCTGCATCAGCTGAGGTTCTTTCCATGTGTCTTTTTCTTTTCCGTAG
GTCCCTTTATTTTGTAGAAATGGGCGGGGCCTTTTCCTTTGAAACTGTTA
AATTAAAAAATTCCCAA
back to top