EY702732

Overview
NameEY702732
Unique NameEY702732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702732_ssr37 microsatellite EY702732_ssr37:37..48. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.958e-29
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 135

HSP 2 Score: 63.5438 bits (153), Expect = 8.958e-29
Identity = 35/80 (43.75%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D L+P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.166e-28
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE F + G   G EAVWLK G+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWLKAGS 137

HSP 2 Score: 58.9214 bits (141), Expect = 1.166e-28
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G    + D L+P G   P  + + P      K+KE K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  166 QVLLMGAVEGYRVAGGPLGVVVDPLYPGGSFDPLGLAEDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLA 245
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.166e-28
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 137

HSP 2 Score: 63.1586 bits (152), Expect = 1.166e-28
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  166 QVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.166e-28
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 136

HSP 2 Score: 63.1586 bits (152), Expect = 1.166e-28
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  165 QVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.166e-28
Identity = 47/91 (51.65%), Postives = 56/91 (61.54%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR ++L  G L   E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 135

HSP 2 Score: 60.4622 bits (145), Expect = 1.166e-28
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D L+P G   P  +   P      K+KE+KKGRLAM +M G F QA   G+GP+ENLA
Sbjct:  164 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLA 243
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.167e-28
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE  ++ G   G EAVW K G+
Sbjct:   46 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGS 132

HSP 2 Score: 62.003 bits (149), Expect = 1.167e-28
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D L+P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  161 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.167e-28
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE  ++ G   G EAVW K G+
Sbjct:   39 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGS 125

HSP 2 Score: 62.003 bits (149), Expect = 1.167e-28
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D ++P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  154 QVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 233
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.518e-28
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   51 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 137

HSP 2 Score: 62.7734 bits (151), Expect = 1.518e-28
Identity = 35/80 (43.75%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D L+P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  166 QVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.518e-28
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE  ++ G   G EAVW K G+
Sbjct:   47 WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGS 133

HSP 2 Score: 61.6178 bits (148), Expect = 1.518e-28
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D ++P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  162 QVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 241
[Close]
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.518e-28
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   49 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 135

HSP 2 Score: 62.7734 bits (151), Expect = 1.518e-28
Identity = 34/80 (42.50%), Postives = 47/80 (58.75%), Query Frame = 2 
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  164 QVILMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 243
The following BLAST results are available for this feature:
BLAST of EY702732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB2B_SOLLC8.958e-2949.45Chlorophyll a-b binding protein 1B, chloroplastic ... [more]
CB22_PETSP1.166e-2851.65Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB24_TOBAC1.166e-2849.45Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.166e-2849.45Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB22_MAIZE1.166e-2851.65Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE1.167e-2849.45Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA1.167e-2849.45Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2G_SOLLC1.518e-2849.45Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB23_SOYBN1.518e-2849.45Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB22_TOBAC1.518e-2849.45Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702732 ID=EY702732; Name=EY702732; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGCAA
CACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCA
TTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTT
AAGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGC
TCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCG
CCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGGATGGTCCTGACCGA
AGAATTTTCTTGCCCGATGGTCTCTTGGACAGATCTGAGATCCCTGAGTA
CTTGACCGGAGAAGTTCCCGGAGACTATGGGTACTATCCTTTTGGTCTCA
GCAAGAAACCAGACGACTTCAGCAAATATCATGCATATGAATTGATTCAT
GCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTT
TAACAAGATTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGCTCAAGACTG
GAGCTCTACTTCTTGATGGAACACATTGAACTACTTCGGAGAGACATCCC
AATCAACCTTGTGTTTGCTGTCATTGCTGAGACTGCTCTTGTAGGTGGTG
CTGACTATTATAGAATCACCAACGGGTCGGATTTGGATGACATGCTTCAC
CCAGATGGTCCAATTTGACCCACTGTGATAATCAAAAGACCCTGACCAAT
TTGCATGGCTAAACTGAAGGAGATCAAGAAGGGAAGACTTGCAATGTTTG
CCATGACTGGTTGCTTTTCTCAAGCTAATGCCAAGGGGGAAGGCCCAATT
GAGAACCTTGCTAAACTTTCAAGGATGCTTTTGCAAAACCTGCTTTACCG
GATTTCCGAAAAGGAG
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