EY702732 | Citrus Genome Database

Overview


Name	EY702732
Unique Name	EY702732
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	916

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.623e-28
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   50 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 136

HSP 2 Score: 60.077 bits (144), Expect = 9.623e-28
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+      ++ D L+P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  165 QVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLA 244

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.626e-28
Identity = 47/91 (51.65%), Postives = 54/91 (59.34%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  FL        + P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G I PE  +K G   G EAVW K GA
Sbjct:   48 WYGADRPKFLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFG-EAVWFKAGA 134

HSP 2 Score: 58.151 bits (139), Expect = 9.626e-28
Identity = 35/80 (43.75%), Postives = 45/80 (56.25%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   +  D L+P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENLA
Sbjct:  163 QVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 242

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.253e-27
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+    LS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 137

HSP 2 Score: 62.3882 bits (150), Expect = 1.253e-27
Identity = 34/80 (42.50%), Postives = 46/80 (57.50%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  166 QVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.253e-27
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR ++L  G    S  P YL+GE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE   K G   G EAVW K G+
Sbjct:   49 WYGSDRPLYL--GPFSGSP-PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKFG-EAVWFKAGS 135

HSP 2 Score: 62.003 bits (149), Expect = 1.253e-27
Identity = 32/80 (40.00%), Postives = 47/80 (58.75%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   +++D ++P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GPIENL+
Sbjct:  164 QVILMGAVEGYRVAGGPLGEVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLS 243

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.637e-27
Identity = 44/91 (48.35%), Postives = 54/91 (59.34%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPD   +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+RWAMLGA G + PE  ++ G   G EAVW K G+
Sbjct:   12 WHGPDGVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGS 98

HSP 2 Score: 59.6918 bits (143), Expect = 1.637e-27
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D L+P G   P  + + P      K+KE+K GRLAMF+M G F  A   G+GP+ENLA
Sbjct:  127 QVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLA 206

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.123e-27
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  +L        E P YLTGE PGDYG+   GLS  P+ F++    E+IH+RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 136

HSP 2 Score: 62.7734 bits (151), Expect = 2.123e-27
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 2

Query:  629 ETALVGGADYYRITNGSDL---DDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+     L   +D+L+P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GPIENLA
Sbjct:  165 QVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.123e-27
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  +L        E P YLTGE PGDYG+   GLS  P+ F++    E+IH+RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   50 WYGSDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 136

HSP 2 Score: 62.7734 bits (151), Expect = 2.123e-27
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 2

Query:  629 ETALVGGADYYRITNGSDL---DDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+     L   +D+L+P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GPIENLA
Sbjct:  165 QVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLA 245

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.124e-27
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   48 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFG-EAVWFKKGS 134

HSP 2 Score: 59.3066 bits (142), Expect = 2.124e-27
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   ++ D L+P G   P  +          K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  163 QVVLMGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 242

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.599e-27
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        + P YLTGE PGDYG+   GLS  P+ F++    E+IH+RWAMLGA G + PE  +K G   G EAVW K GA
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGA 133

HSP 2 Score: 55.8398 bits (133), Expect = 3.599e-27
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            +  L+G  + YR+  G   +  D ++P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GPIENL
Sbjct:  162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240

[Close]

BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.599e-27
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 1

Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        + P YLTGE PGDYG+   GLS  P+ F++    E+IH+RWAMLGA G + PE  +K G   G EAVW K GA
Sbjct:   47 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGA 133

HSP 2 Score: 55.8398 bits (133), Expect = 3.599e-27
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2

Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            +  L+G  + YR+  G   +  D ++P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GPIENL
Sbjct:  162 QVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 240

The following BLAST results are available for this feature:

BLAST of EY702732 vs. ExPASy Swiss-Prot

BLAST of EY702732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63


Match Name	E-value	Identity	Description
CB25_NICPL	9.623e-28	49.45	Chlorophyll a-b binding protein E, chloroplastic O...	[more]
CB21_LEMGI	9.626e-28	51.65	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB25_PETSP	1.253e-27	48.35	Chlorophyll a-b binding protein 91R, chloroplastic...	[more]
CB23_POLMU	1.253e-27	49.45	Chlorophyll a-b binding protein type 1 member F3, ...	[more]
CB21_PEA	1.637e-27	48.35	Chlorophyll a-b binding protein AB96 (Fragment) OS...	[more]
CB22_ARATH	2.123e-27	47.25	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ARATH	2.123e-27	47.25	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB22_HORVU	2.124e-27	49.45	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB23_ORYSJ	3.599e-27	49.45	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB23_ORYSI	3.599e-27	49.45	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-011-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702732 ID=EY702732; Name=EY702732; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGCAA
CACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCA
TTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTT
AAGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGC
TCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCG
CCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGGATGGTCCTGACCGA
AGAATTTTCTTGCCCGATGGTCTCTTGGACAGATCTGAGATCCCTGAGTA
CTTGACCGGAGAAGTTCCCGGAGACTATGGGTACTATCCTTTTGGTCTCA
GCAAGAAACCAGACGACTTCAGCAAATATCATGCATATGAATTGATTCAT
GCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTT
TAACAAGATTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGCTCAAGACTG
GAGCTCTACTTCTTGATGGAACACATTGAACTACTTCGGAGAGACATCCC
AATCAACCTTGTGTTTGCTGTCATTGCTGAGACTGCTCTTGTAGGTGGTG
CTGACTATTATAGAATCACCAACGGGTCGGATTTGGATGACATGCTTCAC
CCAGATGGTCCAATTTGACCCACTGTGATAATCAAAAGACCCTGACCAAT
TTGCATGGCTAAACTGAAGGAGATCAAGAAGGGAAGACTTGCAATGTTTG
CCATGACTGGTTGCTTTTCTCAAGCTAATGCCAAGGGGGAAGGCCCAATT
GAGAACCTTGCTAAACTTTCAAGGATGCTTTTGCAAAACCTGCTTTACCG
GATTTCCGAAAAGGAG