EY702732

Overview
NameEY702732
Unique NameEY702732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.096e-27
Identity = 45/91 (49.45%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  FL        E P YL GE  GDYG+   GLS  P+ F++    E+IHARWAMLGA G + PE   K G   G EAVW K GA
Sbjct:   52 WYGADRPKFLGPF---SGETPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFG-EAVWFKAGA 138          

HSP 2 Score: 60.8474 bits (146), Expect = 6.096e-27
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            +  L+G  + YR+  G   ++ D ++P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GP+ENL
Sbjct:  167 QVVLMGAVEGYRVAGGPLGEVTDPIYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_NICPL (Chlorophyll a-b binding protein C, chloroplastic OS=Nicotiana plumbaginifolia GN=CABC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.097e-27
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GP+R  +L        E P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   51 WYGPNRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKGGS 137          

HSP 2 Score: 60.077 bits (144), Expect = 6.097e-27
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+      ++ D L+P G   P  + + P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  166 QVVLMGAVEGYRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 245          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.097e-27
Identity = 43/91 (47.25%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  +L        E P YLTGE PGDYG+   GLS  P+ F++    E+IH RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   49 WYGSDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 135          

HSP 2 Score: 62.003 bits (149), Expect = 6.097e-27
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 2
Query:  629 ETALVGGADYYRITNGSDL---DDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+     L   +D+L+P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  164 QVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 244          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.033e-26
Identity = 45/91 (49.45%), Postives = 54/91 (59.34%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        +IP YLTGE PGDYG+   GLS  P+ F++    E+IH+RWAMLGA G   PE   K G   G EAVW K G+
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGS 135          

HSP 2 Score: 55.4546 bits (132), Expect = 1.033e-26
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 2
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            +  L+G  + YR+  G   +  D L+P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GPI+NL
Sbjct:  164 QVVLMGFVEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNL 242          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.345e-26
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  +L        + P YLTGE PGDYG+   GLS  P+ F++    E+IH RWAMLGA G + PE  +K G   G EAVW K G+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGS 135          

HSP 2 Score: 58.5362 bits (140), Expect = 1.345e-26
Identity = 34/80 (42.50%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  626 AETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            A+  L+G  + YR+  G   +  D ++P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENL
Sbjct:  163 AQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.353e-26
Identity = 38/73 (52.05%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  337 EIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+ WAMLGA G + PE  ++ G   G EAVW K G+
Sbjct:    5 EPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGS 76          

HSP 2 Score: 62.003 bits (149), Expect = 1.353e-26
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 2
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D ++P G   P  +   P      K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  105 QVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 184          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.281e-26
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  280 KWDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            +W GPDR  +L       +  P YLTGE PGDYG+   GLS  P+ F KY   E+IHARWA+LGA G + PE  +        E VW K GA
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGA 126          

HSP 2 Score: 56.6102 bits (135), Expect = 2.281e-26
Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = 2
Query:  605 NLVFAVIAETALVGGADYYRITNGSDLD--DMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            N+V  +  +  L+G  + YR+  G   +  D L+P     P  +   P      K+KEIK GRLAMF+  G F QA   G+GPI+NLA
Sbjct:  147 NIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLA 234          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.285e-26
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  +L        + P YLTGE PGDYG+   GLS  P+ F++    E+IH RWAMLGA G + PE  +K G   G EAVW K G+
Sbjct:   21 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFG-EAVWFKAGS 107          

HSP 2 Score: 57.7658 bits (138), Expect = 2.285e-26
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 2
Query:  626 AETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            ++  L+G  + YR+  G   +  D ++P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENL+
Sbjct:  135 SQVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLS 215          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.967e-26
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  +L        + P YLTGE PGDYG+   GLS  P+ F++    E+IH RWAMLGA G + PE  +K G   G EAVW K G+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGS 135          

HSP 2 Score: 57.3806 bits (137), Expect = 2.967e-26
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YR+  G   +  D ++P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENL+
Sbjct:  164 QVVLMGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLS 243          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.866e-26
Identity = 47/89 (52.81%), Postives = 53/89 (59.55%), Query Frame = 1
Query:  289 GPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            GP+R  +L  G    +  P YLTGE PGDYG+   GLS  P+ F +Y   ELIHARWAMLGA G   PE   K G   G EAVW K GA
Sbjct:   38 GPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGA 123          

HSP 2 Score: 53.1434 bits (126), Expect = 3.866e-26
Identity = 32/87 (36.78%), Postives = 45/87 (51.72%), Query Frame = 2
Query:  605 NLVFAVIAETALVGGADYYRITNGSDLD--DMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            N+V     +  L+G  + YR+  G   +  D L+P     P  +   P      K+KEIK GRLA F+M G F QA   G+GP++NL
Sbjct:  144 NIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNL 230          
The following BLAST results are available for this feature:
BLAST of EY702732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB2_PHYPA6.096e-2749.45Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_NICPL6.097e-2748.35Chlorophyll a-b binding protein C, chloroplastic O... [more]
CB21_SINAL6.097e-2747.25Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB215_PEA1.033e-2649.45Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB26_PETSP1.345e-2647.25Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB22_CUCSA1.353e-2652.05Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLMO2.281e-2646.74Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB25_SOLLC2.285e-2647.25Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB24_SOLLC2.967e-2647.25Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB2_CHLRE3.866e-2652.81Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702732 ID=EY702732; Name=EY702732; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGCAA
CACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCA
TTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTT
AAGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGC
TCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCG
CCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGGATGGTCCTGACCGA
AGAATTTTCTTGCCCGATGGTCTCTTGGACAGATCTGAGATCCCTGAGTA
CTTGACCGGAGAAGTTCCCGGAGACTATGGGTACTATCCTTTTGGTCTCA
GCAAGAAACCAGACGACTTCAGCAAATATCATGCATATGAATTGATTCAT
GCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTT
TAACAAGATTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGCTCAAGACTG
GAGCTCTACTTCTTGATGGAACACATTGAACTACTTCGGAGAGACATCCC
AATCAACCTTGTGTTTGCTGTCATTGCTGAGACTGCTCTTGTAGGTGGTG
CTGACTATTATAGAATCACCAACGGGTCGGATTTGGATGACATGCTTCAC
CCAGATGGTCCAATTTGACCCACTGTGATAATCAAAAGACCCTGACCAAT
TTGCATGGCTAAACTGAAGGAGATCAAGAAGGGAAGACTTGCAATGTTTG
CCATGACTGGTTGCTTTTCTCAAGCTAATGCCAAGGGGGAAGGCCCAATT
GAGAACCTTGCTAAACTTTCAAGGATGCTTTTGCAAAACCTGCTTTACCG
GATTTCCGAAAAGGAG
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