EY702732

Overview
NameEY702732
Unique NameEY702732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.027e-26
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR  +L        + P YLTGE PGDYG+   GLS  P+ F++    E+IH RWAMLGA G + PE  +K G   G EAVW K G+
Sbjct:   49 WYGEDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGS 135          

HSP 2 Score: 56.6102 bits (135), Expect = 5.027e-26
Identity = 33/80 (41.25%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  626 AETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            ++  L+G  + YR+  G   +  D ++P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENL
Sbjct:  163 SQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 242          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.542e-26
Identity = 47/92 (51.09%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSE-IPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR    P  L   SE  P YLTGE PGDYG+    +S  P+ F+K    E+IH RWAMLGA G + PE   K G   G EAVW K GA
Sbjct:   50 WYGPDR----PKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFG-EAVWFKAGA 136          

HSP 2 Score: 56.6102 bits (135), Expect = 6.542e-26
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 2
Query:  629 ETALVGGADYYRI---TNGSDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            +  L+G  + YR+   T G  LD +L P G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENL
Sbjct:  165 QVVLMGLIEGYRVGGGTLGEGLDPLL-PGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.647e-23
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W G DR ++L  G L  S  P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWA+    G + PE   + G   G E VW K G+
Sbjct:   48 WYGADRVLYL--GPLSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFG-EGVWFKAGS 134          

HSP 2 Score: 55.8398 bits (133), Expect = 3.647e-23
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 2
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + Y +  G   ++ D L+  G   P  +   P      K+KEIK GRLAMF+M G F QA   G+GPIENLA
Sbjct:  163 QVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLA 242          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.650e-23
Identity = 40/91 (43.96%), Postives = 48/91 (52.75%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        E P YLTGE          GLS  P+ F+K    E+IH+RWAMLGA G + PE   + G   G EAVW K G+
Sbjct:   48 WYGPDRVKYLGPF---SGEAPSYLTGEF--------HGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGS 126          

HSP 2 Score: 62.3882 bits (150), Expect = 3.650e-23
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = 2
Query:  629 ETALVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            +  L+G  + YRI  G   ++ D ++P G   P  +   P  +   K+KE+K GRLAMF+M G F QA   G+GP+ENLA
Sbjct:  155 QVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLA 234          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.745e-23
Identity = 43/91 (47.25%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L       ++ P YL GE PGDYG+   GLS  P+ F+K  A E+IH RWAMLGA G I PE   K       E VW K G+
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGS 134          

HSP 2 Score: 48.9062 bits (115), Expect = 4.745e-23
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 2
Query:  611 VFAVIA-ETALVGGADYYRITN--GSDLDDMLHPDGP-I*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            + AV+  +  L+G  + +RI    G    + L+P G    P  +   P      K+KEIK GRLAMF+M G F QA   G+GP+ENL
Sbjct:  156 ILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.359e-22
Identity = 34/74 (45.95%), Postives = 43/74 (58.11%), Query Frame = 1
Query:  343 PEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAF-NKIGANCGPEAVWLKTGALL 561
            P   TGE PGDYG+   GLS  P+ F +Y   ELIHAR  +LGA G + PE   ++ G   G  A+W K GA +
Sbjct:   73 PRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAI 146          

HSP 2 Score: 58.151 bits (139), Expect = 1.359e-22
Identity = 35/87 (40.23%), Postives = 46/87 (52.87%), Query Frame = 2
Query:  605 NLVFAVIAETALVGGADYYRITNGSDLD--DMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            N+V  +  +  L+G  + YR+  G   +  D L+P     P  +   P      K+KEIK GRLAMFA  G F QA   G+GPIENL
Sbjct:  165 NIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENL 251          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.360e-22
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L       ++ P YL GE PGDYG+   GLS  P+ F++  A E+IH RWAMLGA G + PE   K       E VW K G+
Sbjct:   50 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGS 137          

HSP 2 Score: 48.9062 bits (115), Expect = 1.360e-22
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 2
Query:  611 VFAVIA-ETALVGGADYYRIT--NGSDLDDMLHPDGP-I*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENL 859
            + AV+  +  L+G  + +RI   +G    + L+P G    P  +   P      K+KEIK GRLAMF+M G F QA   G+GP+ENL
Sbjct:  159 ILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.633e-19
Identity = 38/73 (52.05%), Postives = 45/73 (61.64%), Query Frame = 1
Query:  337 EIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            E P YLTGE PGDYG+   GLS  P+ F+K    E+IH+R AM  A G I PE  + +G   G EAVW K GA
Sbjct:   68 EWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG-EAVWFKAGA 139          

HSP 2 Score: 43.5134 bits (101), Expect = 3.633e-19
Identity = 29/77 (37.66%), Postives = 41/77 (53.25%), Query Frame = 2
Query:  638 LVGGADYYRITNG--SDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTGCFSQANAKGEGPIENLA 862
            L+G  + YRI  G   ++ D L+P G      + +        K+KE+K GRLAMF+M G F QA    +  +ENLA
Sbjct:  171 LMGAVEGYRIARGPLGEVTDPLYP-GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLA 246          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 3.569e-16
Identity = 45/91 (49.45%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  283 WDGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEAFNKIGANCGPEAVWLKTGA 555
            W GPDR  +L        + P YLTGE PGDYG+   GLS  P+ F+K    E+IH RWAMLGA G + PE   K G   G EAVW K G+
Sbjct:   48 WYGPDRPKYLGPF---SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFG-EAVWFKAGS 134          
BLAST of EY702732 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 5.667e-16
Identity = 23/52 (44.23%), Postives = 34/52 (65.38%), Query Frame = 1
Query:  343 PEYLTGEVPGDYGYYPFGLSKKPDDFSKYHAYELIHARWAMLGAAGFIIPEA 498
            P +L G  PGD+G+ P GL+  P++F ++   E+ H RWAML   G ++PEA
Sbjct:   55 PAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEA 106          

HSP 2 Score: 46.9802 bits (110), Expect = 5.667e-16
Identity = 34/87 (39.08%), Postives = 41/87 (47.13%), Query Frame = 2
Query:  605 NLVFAVIAETALVGGADYYRITNGSDLDDMLHPDGPI*PTVIIKRP*PICMAKLKEIKKGRLAMFAMTG-CFSQANAKGEGPIENLA 862
            NL   +  E   +  A+  R T   D +   +P G   P    K P      KLKEIK GRLAM A  G C  Q+   G GP+ENLA
Sbjct:  137 NLPTILAIEFLAIAFAEQQR-TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLA 222          
The following BLAST results are available for this feature:
BLAST of EY702732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB23_TOBAC5.027e-2647.25Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_PINTH6.542e-2651.09Chlorophyll a-b binding protein type I, chloroplas... [more]
CB48_MAIZE3.647e-2345.05Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB22_SOYBN3.650e-2343.96Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_SOLLC4.745e-2347.25Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_DUNSA1.359e-2245.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_HORVU1.360e-2245.05Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_MALDO3.633e-1952.05Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB21_SILPR3.569e-1649.45Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB121_HORVU5.667e-1644.23Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-F04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702732 ID=EY702732; Name=EY702732; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGCAA
CACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCA
TTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTT
AAGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGC
TCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCG
CCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGGATGGTCCTGACCGA
AGAATTTTCTTGCCCGATGGTCTCTTGGACAGATCTGAGATCCCTGAGTA
CTTGACCGGAGAAGTTCCCGGAGACTATGGGTACTATCCTTTTGGTCTCA
GCAAGAAACCAGACGACTTCAGCAAATATCATGCATATGAATTGATTCAT
GCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTT
TAACAAGATTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGCTCAAGACTG
GAGCTCTACTTCTTGATGGAACACATTGAACTACTTCGGAGAGACATCCC
AATCAACCTTGTGTTTGCTGTCATTGCTGAGACTGCTCTTGTAGGTGGTG
CTGACTATTATAGAATCACCAACGGGTCGGATTTGGATGACATGCTTCAC
CCAGATGGTCCAATTTGACCCACTGTGATAATCAAAAGACCCTGACCAAT
TTGCATGGCTAAACTGAAGGAGATCAAGAAGGGAAGACTTGCAATGTTTG
CCATGACTGGTTGCTTTTCTCAAGCTAATGCCAAGGGGGAAGGCCCAATT
GAGAACCTTGCTAAACTTTCAAGGATGCTTTTGCAAAACCTGCTTTACCG
GATTTCCGAAAAGGAG
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