EY702711

Overview
NameEY702711
Unique NameEY702711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9998 contig Csv1_Contig9998:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAAC (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain COL) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAAB (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAA8 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain NCTC 8325) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAA3 (Transcription-repair-coupling factor OS=Staphylococcus aureus (strain USA300) GN=mfd PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.372e-21
Identity = 36/99 (36.36%), Postives = 62/99 (62.63%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +   +     I L++     K+ +  ++ L+TG + +V+GTH L+++ +++  L L IVDE+QRFGV  + R  +
Sbjct:  669 QVAFLVPTTILAQQHYETLIERMQDFPVE-----IQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKT 762

HSP 2 Score: 51.9878 bits (123), Expect = 1.372e-21
Identity = 31/90 (34.44%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      + + +  EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  769 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN---MSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDAN 855
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_STAHJ (Transcription-repair-coupling factor OS=Staphylococcus haemolyticus (strain JCSC1435) GN=mfd PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.019e-21
Identity = 35/99 (35.35%), Postives = 60/99 (60.61%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q AF+VPT +LA QHYE L++ + +        +I L++     K+ +  ++ L++G + +V+GTH L+ + + +  L L IVDE+QRFGV  + R  +
Sbjct:  670 QVAFLVPTTILAQQHYETLIERMQDFPV-----QIELISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKT 763

HSP 2 Score: 53.9138 bits (128), Expect = 3.019e-21
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLD-ELQSGGKVYLVY----PVIEQSEQLPQLRAAAS 709
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N     N  K  L+ EL   G+V+ +Y     + E+ EQL  L   A+
Sbjct:  770 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQN----SNFIKEALERELSRDGQVFYLYNRVQSIYEKREQLQMLMPDAN 856
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_BACSU (Transcription-repair-coupling factor OS=Bacillus subtilis GN=mfd PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 9.200e-20
Identity = 35/94 (37.23%), Postives = 54/94 (57.45%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT +LA QHYE + +   +     +   I LL+     K++    K L+ G + +VIGTH L+++ V +  L L I+DE+QRFGV  +
Sbjct:  674 QVALLVPTTILAQQHYETIKERFQD-----YPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHK 762

HSP 2 Score: 54.6842 bits (130), Expect = 9.200e-20
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQ 682
            VL ++ATPIPRTL +++ G   L+ I   P  R P++TY++E N      V + +  EL  GG+VY +Y  +E  E+
Sbjct:  774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNG---ALVREAIERELARGGQVYFLYNRVEDIER 847
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_SYNY3 (Transcription-repair-coupling factor OS=Synechocystis sp. (strain PCC 6803) GN=mfd PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 7.519e-19
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQL 685
            VL ++ATPIPRTL ++L G   ++ IT  PP R PIKT++   N    E +   + +EL  GG+V+ V P IE  E+L
Sbjct:  797 VLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNP---EVIRTAIRNELDRGGQVFYVVPRIEGIEEL 871

HSP 2 Score: 56.6102 bits (135), Expect = 7.519e-19
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKP---KIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q A + PT +L  QHY H LK       ++  P    I LL       + + I   L++G++ +V+GT  ++   V+F  L L ++DE+QRFGV Q+ +  +
Sbjct:  697 QVALLAPTTVLTQQHY-HTLK-------ERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKT 790
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_HAEIN (Transcription-repair-coupling factor OS=Haemophilus influenzae GN=mfd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.635e-18
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT LLA QHYE+      N+  +     + +L+     K+ + I ++L  G + ++IGTH LI   V+F+ L L I+DE+ RFGV Q+
Sbjct:  653 QVAVLVPTTLLAQQHYENFKDRFANLPVN-----VEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQK 741

HSP 2 Score: 46.2098 bits (108), Expect = 3.635e-18
Identity = 25/69 (36.23%), Postives = 44/69 (63.77%), Query Frame = 2 
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY 658
            +L ++ATPIPRTL +A+ G   L+ I+  P  R+ IKT++ + ++     V + +L E+  GG+VY ++
Sbjct:  753 ILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDL---VVREAILREILRGGQVYYLH 818
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_RICFE (Transcription-repair-coupling factor OS=Rickettsia felis GN=mfd PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.636e-18
Identity = 33/94 (35.11%), Postives = 57/94 (60.64%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT +L +QH+   ++       +     I  L+     K++++IR +L++G I ++IGTHSL+ +  +F  L+L I+DE+Q FGV Q+
Sbjct:  632 QVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISAKEAKIIRSELESGKINIIIGTHSLLHKNTKFFNLKLLIIDEEQHFGVGQK 720

HSP 2 Score: 46.2098 bits (108), Expect = 3.636e-18
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 2 
Query:  449 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQL-PQLRAAASDL 715
            HVLAMSATPIPRTL +++ G   L+ I   P  R+ ++T ++  +      +   +L E   GG+ + V P I+  E +  QL+    +L
Sbjct:  731 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTMVMPFDP---VIIRDALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPEL 817
[Close]
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_RICBR (Transcription-repair-coupling factor OS=Rickettsia bellii (strain RML369-C) GN=mfd PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 3.637e-18
Identity = 32/94 (34.04%), Postives = 58/94 (61.70%), Query Frame = 3 
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT +L +QH+    +   + + +     I  L+     K+++++R +L++G I ++IGTHSL+ +  +F  L+L I+DE+Q FGV Q+
Sbjct:  631 QVAVVVPTTILCSQHFARFTERFKDSDLN-----IKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQK 719

HSP 2 Score: 47.3654 bits (111), Expect = 3.637e-18
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 2 
Query:  449 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQL-PQLRAAASDL 715
            HVLAMSATPIPRTL +++ G   L+ I   P  R+ ++T ++  +      +   +L E   GGK + V P I   E +  QL+    +L
Sbjct:  730 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDP---VIIRDALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPEL 816
The following BLAST results are available for this feature:
BLAST of EY702711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
MFD_STAAC1.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAAB1.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAA81.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAA31.372e-2136.36Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_STAHJ3.019e-2135.35Transcription-repair-coupling factor OS=Staphyloco... [more]
MFD_BACSU9.200e-2037.23Transcription-repair-coupling factor OS=Bacillus s... [more]
MFD_SYNY37.519e-1943.59Transcription-repair-coupling factor OS=Synechocys... [more]
MFD_HAEIN3.635e-1838.30Transcription-repair-coupling factor OS=Haemophilu... [more]
MFD_RICFE3.636e-1835.11Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_RICBR3.637e-1834.04Transcription-repair-coupling factor OS=Rickettsia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-D06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702711 ID=EY702711; Name=EY702711; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGTAAAAGTTACTTTGTTCGAGGTCTTCTCATTTGGATAG
TTTAGTTCATAATGATGGTCGTCAGATTCAGTGTCTTTTCTTCAGGCAGC
TTTTATGGTTCCAACTGAGTTGCTTGCAACCCAGCACTATGAGCACTTGC
TTAAATTGCTAGATAATATGGAGGAGGACAAGCACAAACCTAAAATTGCC
TTACTAACAGGTTCAACACCAGTAAAACAATCCCGGATGATCCGTAAGGA
TCTTCAAACTGGAGATATCACTCTGGTCATTGGAACCCATAGTTTAATTG
CTGAAAAAGTTGAATTTTCTGCTTTACGCCTCGCTATTGTGGATGAACAA
CAACGCTTTGGTGTGGTACAGAGAGGCAGATTTAACAGTAAGGTATGGCA
ATGGTTAATTCAGACGGGTCTCCAAAAGATGATCAACATATGGCTCCTCA
TGTTCTTGCCATGTCAGCCACTCCTATCCCAAGAACGCTTGCTTTGGCAT
TATATGGGGATATGTCCTTAACACAGATAACTGACTTACCTCCAGGAAGG
ATACCTATTAAGACCTACATCATTGAAGGAAATGAGAAGGGCTATGAGAA
TGTGTACAAGATGATGCTTGACGAACTGCAATCAGGTGGAAAAGTGTACC
TTGTGTATCCTGTCATTGAACAATCTGAGCAGTTGCCCCAGCTCCGTGCT
GCTGCTTCAGATCTTGAAACTATATCTCAAAGATTTCAGGATTACAGCTG
CGGGTTGNTGCCTGGGGAAATGAAGAGTGACGAAAAGATGAGGTTTTAGA
ACGGTCAGATCTGGCGAGACACTATATTGCTTTCCACTAAGTAATTGAAA
TGGTGGTGATGGTCCCAAG
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