EY702711

Overview
NameEY702711
Unique NameEY702711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9998 contig Csv1_Contig9998:1..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_RICCN (Transcription-repair-coupling factor OS=Rickettsia conorii GN=mfd PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.728e-18
Identity = 33/94 (35.11%), Postives = 58/94 (61.70%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT +L +QH+   ++       +     I  L+     K++++IR +L++G I ++IGTHSL+ + ++F  L+L I+DE+Q FGV Q+
Sbjct:  633 QVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQK 721          

HSP 2 Score: 45.4394 bits (106), Expect = 4.728e-18
Identity = 33/92 (35.87%), Postives = 49/92 (53.26%), Query Frame = 2
Query:  449 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVY--KMMLDELQSGGKVYLVYPVIEQSEQL-PQLRAAASDL 715
            HVLAMSATPIPRTL +++ G   L+ I   P  R+ + T ++      Y+ V     +L E   GG+ + V P I+  E +  QL+    +L
Sbjct:  732 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVMP-----YDPVIIRDALLREHFRGGRSFYVVPRIKDIEDIAKQLKQIVPEL 818          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_BUCAI (Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=mfd PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 8.042e-18
Identity = 34/91 (37.36%), Postives = 52/91 (57.14%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGV 365
            Q A +VPT LLA QHY++      N   +     I +L+     K+  +I K  + G I ++IGTH L+ + +E+ +L L I+DE+ RFGV
Sbjct:  316 QVAILVPTTLLAQQHYKNFKIRFSNWPVN-----INILSRFQTQKEQDLIFKHTKNGRINIIIGTHKLLFKNIEWCSLGLLIIDEEHRFGV 401          

HSP 2 Score: 50.0618 bits (118), Expect = 8.042e-18
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIE 670
            +L ++ATPIPRTL +A+ G   L+ I   P  R+ IKT+I    E     + K +L E+  GG+VY +Y  ++
Sbjct:  416 ILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFI---QEYSPILIRKTILREISRGGQVYYIYNKVQ 485          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_ECOLI (Transcription-repair-coupling factor OS=Escherichia coli (strain K12) GN=mfd PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.755e-17
Identity = 35/99 (35.35%), Postives = 52/99 (52.53%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 389
            Q A +VPT LLA QHY++      N        +I +++     K+   I  ++  G I ++IGTH L+   V+F  L L IVDE+ RFGV  + R  +
Sbjct:  651 QVAVLVPTTLLAQQHYDNFRDRFANWPV-----RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 744          

HSP 2 Score: 49.2914 bits (116), Expect = 1.755e-17
Identity = 32/94 (34.04%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYEN--VYKMMLDELQSGGKVYLVYPVIEQ--------SEQLPQLRAA 703
            +L ++ATPIPRTL +A+ G   L+ I   P  R+ +KT++ E     Y++  V + +L E+  GG+VY +Y  +E         +E +P+ R A
Sbjct:  751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE-----YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_RICTY (Transcription-repair-coupling factor OS=Rickettsia typhi GN=mfd PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.857e-17
Identity = 31/94 (32.98%), Postives = 56/94 (59.57%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT +L +QH+   ++       +     I  L+     +++ +IR +L +G I ++IGTH+L+ + ++F  L+L I+DE+Q FGV Q+
Sbjct:  631 QVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVVSSQEANIIRLELASGKINIIIGTHTLLHKNIKFFNLKLLIIDEEQHFGVSQK 719          

HSP 2 Score: 46.9802 bits (110), Expect = 3.857e-17
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  449 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQL-PQLRAAASDL 715
            HVLAMSATPIPRTL ++L G   L+ I   P  R+ ++T ++  +      +   +L E   GG+ + V P I+  E +  QL+    +L
Sbjct:  730 HVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRLEVRTSVMPFDT---VIIRDALLREHFRGGRSFYVVPRIKDMEDIEKQLKQIVPEL 816          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_RICPR (Transcription-repair-coupling factor OS=Rickettsia prowazekii GN=mfd PE=3 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 8.470e-17
Identity = 32/94 (34.04%), Postives = 55/94 (58.51%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT +L +QH+   ++       +     I  L+     K++ +IR +L +G I ++IGTH+L+ +  +F  L+L I+DE+Q FGV Q+
Sbjct:  631 QVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEANIIRLELASGKINIIIGTHALLHKNTKFFNLKLLIIDEEQHFGVSQK 719          

HSP 2 Score: 45.8246 bits (107), Expect = 8.470e-17
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 2
Query:  449 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQL-PQLRAAASDL 715
            HVLAMSATPIPRTL +++ G   L+ I   P  R+ ++T ++  +      +   +L E   GG+ + V P I+  E +  QL+    +L
Sbjct:  730 HVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDP---VIIRDALLREHFRGGRSFYVAPRIKDMEDIEKQLKQIVPEL 816          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_BUCBP (Transcription-repair-coupling factor OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=mfd PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 1.176e-15
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 2
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQ 682
            VL ++ATPIPRTL +A  G   L+ I   P  R+ +KT++    E  Y  + K +L E+  GG+VY +Y  + + E+
Sbjct:  304 VLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFV---REFSYTVIRKAILREILRGGQVYYIYNNVNKIER 377          

HSP 2 Score: 51.6026 bits (122), Expect = 1.176e-15
Identity = 29/91 (31.87%), Postives = 49/91 (53.85%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGV 365
            Q A +VPT LLA QH+ +       +       KI +L+      +   I  ++  G++ ++IGTH ++ + +++  L L IVDE+ RFGV
Sbjct:  204 QVAILVPTTLLAQQHFNNF-----TLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVLIGTHKILLKNLKWKNLGLLIVDEEHRFGV 289          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_MYXXA (Transcription-repair-coupling factor OS=Myxococcus xanthus GN=mfd PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.551e-15
Identity = 34/94 (36.17%), Postives = 52/94 (55.32%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q A +VPT +LA QH+    K   +     +   + +++G     + R I K  + G + ++IGTH L+  +V F  L L IVDE+QRFGV Q+
Sbjct:  706 QVAVLVPTTVLAQQHFLSFKKRFAD-----YPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQK 794          

HSP 2 Score: 43.1282 bits (100), Expect = 2.551e-15
Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 2
Query:  452 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLD-ELQSGGKVYLVYPVIEQSEQL-PQLRA 700
            VL ++ATPIPRTL +++ G   ++ I   P  R  I+T+++    K  + V K  ++ E+  GG+V+ V+  +E    +  QLRA
Sbjct:  806 VLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVM----KYEDTVVKEAIEREVARGGQVFFVHNRVESLPSIETQLRA 886          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: RECG_HELPY (ATP-dependent DNA helicase recG OS=Helicobacter pylori GN=recG PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.370e-15
Identity = 30/83 (36.14%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  446 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQLPQL 694
            PH L  SATPIPRTLALA    +  T I ++P  +  I+T ++  +++ ++ V + + +E+    +V +VYP++ +SE++P L
Sbjct:  377 PHSLQFSATPIPRTLALAKSAFVKTTMIREIPYPK-EIETLVL--HKRDFKIVMEKISEEIAKNHQVIVVYPLVNESEKIPYL 456          

HSP 2 Score: 46.595 bits (109), Expect = 4.370e-15
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 3
Query:  105 MVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            M PT +LA Q Y   LK L    E      + LL G +  K+S  + + +      +VIGT +L+ +K + +   L I DEQ RFG  QR
Sbjct:  284 MAPTSILAKQLYNEALKFLPPYFE------VELLLGGSYKKRSNHLFETITH----VVIGTQALLFDKRDLNEFALVITDEQHRFGTKQR 363          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: RECG_HELPJ (ATP-dependent DNA helicase recG OS=Helicobacter pylori J99 GN=recG PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 4.370e-15
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  446 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVYPVIEQSEQLPQL 694
            PH L  SATPIPRTLALA    +  T I ++P  +  I+T ++   E  ++ V + + +E+    +V +VYP++ +SE++P L
Sbjct:  377 PHSLQFSATPIPRTLALAKSAFVKTTMIREIPYPK-EIETLVLHKRE--FKIVMEKISEEIAKNHQVIVVYPLVNKSEKIPYL 456          

HSP 2 Score: 46.9802 bits (110), Expect = 4.370e-15
Identity = 32/90 (35.56%), Postives = 45/90 (50.00%), Query Frame = 3
Query:  105 MVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            M PT +LA Q Y   LK L    E      + LL G +  K+S  + + +      +VIGT +L+ +K + +   L I DEQ RFG  QR
Sbjct:  284 MAPTSILAKQLYHEALKFLPPYFE------VELLLGGSHKKRSNHLFEKITH----VVIGTQALLFDKRDLNEFALVITDEQHRFGTKQR 363          
BLAST of EY702711 vs. ExPASy Swiss-Prot
Match: MFD_HELPJ (Transcription-repair-coupling factor OS=Helicobacter pylori J99 GN=mfd PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.232e-14
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 3
Query:   93 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 374
            Q+A +VPT LLA QH+E L    +N        K+A L       +   + K ++ G + ++IGTH+++  K  F  L L +VDE+ +FGV Q+
Sbjct:  535 QSALVVPTTLLAHQHFETLKARFENF-----GVKVARLDRYIKTSEKSKLLKAVELGLVDVLIGTHAILGTK--FKNLGLMVVDEEHKFGVKQK 621          

HSP 2 Score: 45.8246 bits (107), Expect = 1.232e-14
Identity = 24/70 (34.29%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  449 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYKMMLDELQSGGKVYLVY 658
            H L+MSATPIPRTL +AL     ++ +   P  R P +T++ E N+   E + +++  EL+  G+++ ++
Sbjct:  632 HFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKND---ELLKEIIYRELRRNGQIFYIH 698          
The following BLAST results are available for this feature:
BLAST of EY702711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
MFD_RICCN4.728e-1835.11Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_BUCAI8.042e-1837.36Transcription-repair-coupling factor OS=Buchnera a... [more]
MFD_ECOLI1.755e-1735.35Transcription-repair-coupling factor OS=Escherichi... [more]
MFD_RICTY3.857e-1732.98Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_RICPR8.470e-1734.04Transcription-repair-coupling factor OS=Rickettsia... [more]
MFD_BUCBP1.176e-1537.66Transcription-repair-coupling factor OS=Buchnera a... [more]
MFD_MYXXA2.551e-1536.17Transcription-repair-coupling factor OS=Myxococcus... [more]
RECG_HELPY4.370e-1536.14ATP-dependent DNA helicase recG OS=Helicobacter py... [more]
RECG_HELPJ4.370e-1537.35ATP-dependent DNA helicase recG OS=Helicobacter py... [more]
MFD_HELPJ1.232e-1435.11Transcription-repair-coupling factor OS=Helicobact... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-D06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702711 ID=EY702711; Name=EY702711; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGTAAAAGTTACTTTGTTCGAGGTCTTCTCATTTGGATAG
TTTAGTTCATAATGATGGTCGTCAGATTCAGTGTCTTTTCTTCAGGCAGC
TTTTATGGTTCCAACTGAGTTGCTTGCAACCCAGCACTATGAGCACTTGC
TTAAATTGCTAGATAATATGGAGGAGGACAAGCACAAACCTAAAATTGCC
TTACTAACAGGTTCAACACCAGTAAAACAATCCCGGATGATCCGTAAGGA
TCTTCAAACTGGAGATATCACTCTGGTCATTGGAACCCATAGTTTAATTG
CTGAAAAAGTTGAATTTTCTGCTTTACGCCTCGCTATTGTGGATGAACAA
CAACGCTTTGGTGTGGTACAGAGAGGCAGATTTAACAGTAAGGTATGGCA
ATGGTTAATTCAGACGGGTCTCCAAAAGATGATCAACATATGGCTCCTCA
TGTTCTTGCCATGTCAGCCACTCCTATCCCAAGAACGCTTGCTTTGGCAT
TATATGGGGATATGTCCTTAACACAGATAACTGACTTACCTCCAGGAAGG
ATACCTATTAAGACCTACATCATTGAAGGAAATGAGAAGGGCTATGAGAA
TGTGTACAAGATGATGCTTGACGAACTGCAATCAGGTGGAAAAGTGTACC
TTGTGTATCCTGTCATTGAACAATCTGAGCAGTTGCCCCAGCTCCGTGCT
GCTGCTTCAGATCTTGAAACTATATCTCAAAGATTTCAGGATTACAGCTG
CGGGTTGNTGCCTGGGGAAATGAAGAGTGACGAAAAGATGAGGTTTTAGA
ACGGTCAGATCTGGCGAGACACTATATTGCTTTCCACTAAGTAATTGAAA
TGGTGGTGATGGTCCCAAG
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