DY305825

Overview
NameDY305825
Unique NameDY305825
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length988
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.038e-16
Identity = 58/179 (32.40%), Postives = 88/179 (49.16%), Query Frame = 3
Query:   66 HQDHEALTLERISQYLLNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE-IGEISLDSDEVQQVDCGKKRKYEENE 599
            H +     L+R+ + +L D    DS             S DE        +T+ + K     + + P T SI   K      + +D  + + +RGVR+RPWG++AAEIRDP + G RVWLGT++T  EAA  YD AA K++G  A+ NFP+    E+++   E +           EN+
Sbjct:   26 HNEKSNSELQRVVRIILTDADATDS-------------SDDEG------RNTVRRVKRHVTEINLMPSTKSIGDRKRRSVSPD-SDVTRRKKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSEND 183          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.038e-16
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  342 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP 515
            YRGVR+RPWG+YAAEIRDP KK +RVWLGTF+T  EAA+AYD  A + RG KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.839e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:  333 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLE 521
            ++ YRGVR+RPWGK+AAEIRDP ++  R+WLGTF TA EAA  YDNAA K+RG  A+ NF ++
Sbjct:  114 QKKYRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ 175          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.839e-16
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 3
Query:  333 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 512
            E+ +RGVR+RPWGK+AAEIRDP K+  R+WLGT+NTA EAA  YDNAA ++RG  A+ NF
Sbjct:  119 EKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.154e-15
Identity = 64/164 (39.02%), Postives = 81/164 (49.39%), Query Frame = 3
Query:  114 LNDLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGE----ISLDSDEVQQVDCGKKRKYEE 593
            LN LTP   +   + L  +               ST+S   P+ I ++   P+TS      + K+L          YRGVR+R WGK+ AEIR P K  TR+WLGTF TA +AA AYD AAF++RG  A LNFP  I E    +    D   Q  C   RK EE
Sbjct:   25 LNQLTPYQIHQIQNQLNHRR--------------STISNLSPNRIRMKNLTPSTS------KTKNL----------YRGVRQRHWGKWVAEIRLP-KNRTRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFPNLIHEDMNPLPSSVDTKLQAICKSLRKTEE 157          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.508e-15
Identity = 37/64 (57.81%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  333 ERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI 524
            E+ Y+G+R R WGK+ AEIR+PNK+ +R+WLG++ TAV AA+AYD A F +RG  A LNFP E+
Sbjct:   33 EKRYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEV 95          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: ERF53_ARATH (Ethylene-responsive transcription factor ERF053 OS=Arabidopsis thaliana GN=ERF053 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.508e-15
Identity = 53/113 (46.90%), Postives = 64/113 (56.64%), Query Frame = 3
Query:  342 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEIGEISLDSDE---VQQVDC-------GKKRKYEENEEFERKVAVKKEETVSGW 650
            YRGVR+R WGK+ AEIR P  + TR+WLGTF+TA EAA AYD  AFK+RG  A LNFP    E+ L+  E   V Q  C          R+ E++      V    EET  GW
Sbjct:  187 YRGVRQRHWGKWVAEIRKPRNR-TRLWLGTFDTAEEAAMAYDREAFKLRGETARLNFP----ELFLNKQEPTPVHQKQCETGTTSEDSSRRGEDDSSTALAVGGVSEET--GW 292          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.359e-15
Identity = 55/146 (37.67%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  126 TPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERH-----------------YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNF 512
            TP D +  I  +   +P +TD        SS+  +    S+  R+      I R  DED + + A   K++                  YRGVR+RPWGK+AAEIRDP+ + TR+WLGTF TA EAA  YD AA +++G  A  NF
Sbjct:   19 TPFDGFPKIVKIIVTDPCATD--------SSSDEENDNKSVAPRVKRYVDEI-RFCDEDDEPKPARKAKKKSPAAAAENGGDLVKSVVKYRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.729e-15
Identity = 45/86 (52.33%), Postives = 54/86 (62.79%), Query Frame = 3
Query:  342 YRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFP---LEIGEISLDSDEVQQVDCGKKRKYE 590
            YRGVR+R WGK+ AEIR P  + TR+WLGTF+TA EAA AYD AAFK+RG  A LNFP    + G    D+ E   +      K E
Sbjct:  143 YRGVRQRHWGKWVAEIRLPRNR-TRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFPALRYQTGSSPSDTGEYGPIQAAVDAKLE 227          
BLAST of DY305825 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.729e-15
Identity = 60/181 (33.15%), Postives = 81/181 (44.75%), Query Frame = 3
Query:  120 DLTPMDSYSFISNLPQQNPASTDEQILVQKTSSTLSQRKPSSINVRIPPPTTSIFRLKDEDKDLEVADDYKERHYRGVRRRPWGKYAAEIRDPNKKGTRVWLGTFNTAVEAAKAYDNAAFKMRGRKAILNFPLEI-----------------------GEISLDSDEVQQVDCGKKRKYEE 593
            D T       IS  PQQ      +Q + Q  S TL+          + P    +  +  E     +A     + YRGVR+R WGK+ AEIR P  +  R+WLGTF+TA EAA AYD  AFK+RG  A LNFP                           E++L+S E+  +D G++    E
Sbjct:   85 DPTMQGQKQMISFSPQQQ--QQQQQYMAQYWSDTLN----------LSPRGRMMMMMSQEAVQPYIAT----KLYRGVRQRQWGKWVAEIRKPRSRA-RLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFPEHFVNKESELHDSNSSDQKEPETPQPSEVNLESKELPVIDVGREEGMAE 248          
The following BLAST results are available for this feature:
BLAST of DY305825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
PTI6_SOLLC3.038e-1632.40Pathogenesis-related genes transcriptional activat... [more]
ERF76_ARATH3.038e-1670.69Ethylene-responsive transcription factor 11 OS=Ara... [more]
CRF4_ARATH8.839e-1661.90Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF2_ARATH8.839e-1665.00Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF56_ARATH1.154e-1539.02Ethylene-responsive transcription factor ERF056 OS... [more]
RAP29_ARATH1.508e-1557.81Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF53_ARATH1.508e-1546.90Ethylene-responsive transcription factor ERF053 OS... [more]
CRF5_ARATH3.359e-1537.67Ethylene-responsive transcription factor CRF5 OS=A... [more]
ERF55_ARATH5.729e-1552.33Ethylene-responsive transcription factor ERF055 OS... [more]
ERF54_ARATH5.729e-1533.15Ethylene-responsive transcription factor ERF054 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2CA01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305825 ID=DY305825; Name=DY305825; organism=Citrus sinensis; type=EST; length=988bp
GCCACTTCCTGTTTACTCAAATTTTACAACTAATATTTTTTGAAATGGCA
GCTGGTCATCATCATCACCAAGATCATGAAGCTTTAACCTTAGAGCGCAT
AAGCCAGTACCTCCTCAATGACTTAACACCGATGGATAGCTATAGCTTCA
TCTCCAACCTCCCGCAGCAAAACCCTGCTTCCACTGATGAACAAATTTTA
GTACAAAAGACATCAAGCACTCTAAGTCAACGCAAGCCTTCTTCTATAAA
CGTAAGAATACCTCCTCCAACTACTAGCATCTTCAGGTTGAAAGATGAAG
ATAAAGATTTGGAGGTTGCTGACGATTACAAGGAAAGGCATTACAGGGGA
GTGAGGAGACGGCCGTGGGGAAAATATGCAGCTGAAATTCGTGACCCGAA
TAAAAAGGGGACCCGGGTTTGGCTTGGAACATTTAATACTGCCGTTGAAG
CTGCGAAAGCTTATGACAACGCTGCCTTTAAGATGCGTGGAAGAAAAGCC
ATACTGAATTTTCCTCTTGAAATTGGTGAGATCAGTTTGGACTCTGATGA
AGTGCAGCAAGTTGATTGTGGGAAAAAGAGGAAATATGAGGAAAACGAGG
AGTTTGAGAGAAAAGTGGCCGTGAAGAAGGAGGAAACGGTGAGTGGGTGG
TGTTGGACTANGCCCTTTGACGCCGTCAAGTTGGACCGGGTTTTGGGATG
ATGGAAATGGGATATTTAGTGTGCCGCCGTTATCTCCTTGCTTTGGCCAG
TTGGGCGTTTGCTTAATTTGGAAATATTTGACGGCAAAACACTATTTGAT
GACCTGGGAATGAATTATCCACTTGGTTAAATACTTAACCCACGAATGAA
ACTTGTTTAACCCTGCCATGCACCTAAATTTAAAATAAAAAATTGAATTT
CCCAAACAATTGGCTTTTTTTTTTTTTTTTGGAACCCATGTTTTTTAAAA
AAACTTTTTAATTATTTTATTAATTTGTTTTTTTTTTT
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