DY305804

Overview
NameDY305804
Unique NameDY305804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1192
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: MCATL_RAT (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Rattus norvegicus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.657e-22
Identity = 68/173 (39.31%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  285 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLV 800
            +A D  +G  GG A +I GHPFDT+KV+LQ Q      + P+Y G +   +  I  E   GLYKG+G+PL  +   NAL+F V+G  + AL +  P        Q + GA AG     + CP EL K RLQ Q+A       G A  Y G +D   ++ R E GLRG+ +G+V
Sbjct:    1 MALDFLAGCAGGVAGVIVGHPFDTVKVRLQVQNT----EKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSP------LNQFLAGAAAGAIQCVICCPMELAKTRLQLQAA-------GPARAYKGSLDCLVQIYRHE-GLRGINRGMV 155          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: MCFD_DICDI (Mitochondrial substrate carrier family protein D OS=Dictyostelium discoideum GN=mcfD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.827e-22
Identity = 57/183 (31.15%), Postives = 103/183 (56.28%), Query Frame = 3
Query:  267 SALMGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALL----RSQPGAPLTV--NQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGL 797
            + ++  + KD  +G+VGG + ++ GHPFDTIKV LQ       G  PK+     A+K  +  +G +G+Y+G+  PL +V+  N++ F      ++      + + G  + +  ++    GA AG  +S L  P +L+K +LQ Q    GS    V+++Y GP+DV ++ ++ + G++G+FKG+
Sbjct:   13 AGILNSVGKDFVAGSVGGMSSIMAGHPFDTIKVMLQD----ASGNLPKFKNGFQALKYIMKVDGIKGIYRGLSVPLFSVSFTNSVFFATNNFCQSYFHPPCKDENGEDILIPYHKAAAAGAIAGGVISLLITPRDLVKSKLQVQCRPFGS--TNVSLQYKGPIDVIRQTIKRD-GIKGMFKGI 188          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: YMC1_YEAST (Carrier protein YMC1, mitochondrial OS=Saccharomyces cerevisiae GN=YMC1 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 6.298e-22
Identity = 65/179 (36.31%), Postives = 96/179 (53.63%), Query Frame = 3
Query:  285 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALL---RSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVPQWH 812
            + KDL +GT GG AQ++ G PFDT KV+LQ+   P          AM+ V++ +A EGPRG YKG   PL  V A  +L F V   M+       +   + L++ Q   CG   G+  SFLA P E ++ RLQ Q+   GS   G   ++ GP++  K++  ++  LRGL   ++ + H
Sbjct:   25 VVKDLLAGTAGGIAQVLVGQPFDTTKVRLQTSSTP--------TTAMEVVRKLLANEGPRGFYKGTLTPLIGVGACVSLQFGVNEAMKRFFHHRNADMSSTLSLPQYYACGVTGGIVNSFLASPIEHVRIRLQTQT---GS---GTNAEFKGPLECIKKLRHNKALLRGLTPTILREGH 189          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: MCATL_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Mus musculus GN=Slc25a29 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.298e-22
Identity = 67/173 (38.73%), Postives = 92/173 (53.18%), Query Frame = 3
Query:  285 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLV 800
            +A D  +G  GG A +I GHPFD +KV+LQ Q      + P+Y G +   +  I  E   GLYKG+G+PL  +   NAL+F V+G  + AL +  P        Q + GA AG     + CP EL K RLQ Q+       VG A  Y G +D   ++ R E GLRG+ +G+V
Sbjct:    1 MALDFLAGCAGGVAGVIVGHPFDIVKVRLQVQST----EKPQYRGTLHCFQSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGQDSP------LNQFLAGAAAGAIQCVICCPMELAKTRLQLQA-------VGPARTYKGSLDCLVQIYRHE-GLRGINRGMV 155          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: MCATL_HUMAN (Mitochondrial carnitine/acylcarnitine carrier protein CACL OS=Homo sapiens GN=SLC25A29 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 8.226e-22
Identity = 67/173 (38.73%), Postives = 90/173 (52.02%), Query Frame = 3
Query:  285 IAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQ-MEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLV 800
            +A D  +G  GG A ++ GHPFDT+KV+LQ Q      + P+Y G +   K  I  E   GLYKG+G+PL  +   NAL+F V+G  + AL    P        Q + GA AG     + CP EL K RLQ Q A       G A  Y G +D   ++   E GLRG+ +G+V
Sbjct:    1 MALDFLAGCAGGVAGVLVGHPFDTVKVRLQVQSV----EKPQYRGTLHCFKSIIKQESVLGLYKGLGSPLMGLTFINALVFGVQGNTLRALGHDSP------LNQFLAGAAAGAIQCVICCPMELAKTRLQLQDA-------GPARTYKGSLDCLAQIYGHE-GLRGVNRGMV 155          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: MCFL_DICDI (Mitochondrial substrate carrier family protein L OS=Dictyostelium discoideum GN=mcfL PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.332e-21
Identity = 57/171 (33.33%), Postives = 92/171 (53.80%), Query Frame = 3
Query:  291 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVP 803
            ++   G   GAA  + GHPFDT+KV+LQ++     G   ++ G       TI  EG   LYKG+  PL  ++  N+ +F     +++ + +    P+++ + ++ GA  G  VSF+ACP E +K +LQ Q         GV + Y GP+D  K++     G+RGL+K L+P
Sbjct:   12 RNFIGGFASGAASTLAGHPFDTLKVRLQTE-----GSTGRFRGLAHCFTTTIKEEGFFALYKGVTPPLLGMSIINSCMFGAMNIVKSKIHTDKSTPISLGEIMVSGAITGWIVSFVACPIETVKSKLQVQ-------YTGVKL-YNGPIDCIKKI-----GIRGLYKALIP 164          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: YD1K_SCHPO (Uncharacterized mitochondrial carrier C4G9.20c OS=Schizosaccharomyces pombe GN=SPAC4G9.20c PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.305e-20
Identity = 65/177 (36.72%), Postives = 90/177 (50.85%), Query Frame = 3
Query:  273 LMGDIAKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAPLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVP 803
            L+    KD  +G  GG AQ++ G PFD +KV+LQSQ        P Y  A+D VK+    EG    YKG   PL  +    ++ FT     +    S+ G P+T+ Q  + GA +G+A SFL  P E ++ RLQ Q+        G  V Y GP D  K++  S+ GL G+ KG  P
Sbjct:   13 LVFSFTKDFLAGVSGGVAQVLVGQPFDCVKVRLQSQ----SNVSPIYNNALDCVKKISKNEGLAAFYKGTVLPLLGIGFCVSIQFTTFEYCKRFF-SRDGTPVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQT--------GKNVLYHGPWDCIKKI-SSQYGLSGIMKGYNP 175          

HSP 2 Score: 23.483 bits (49), Expect = 3.305e-20
Identity = 15/55 (27.27%), Postives = 24/55 (43.64%), Query Frame = 2
Query:  779 GSLQGPGPTMAREVQGMLPWFGVYGMGEKVNGRKPRHLPIGKKEQCFWEVVNLGA 943
            G ++G  PT ARE  G+  +F  Y     V     +H    + +   W++   GA
Sbjct:  168 GIMKGYNPTAAREAHGLGMYFLAY--EALVKNTMAKHHLTDRSQTPGWKLCVFGA 220          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: ARG13_NEUCR (Amino-acid transporter arg-13 OS=Neurospora crassa GN=arg-13 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 4.990e-19
Identity = 68/207 (32.85%), Postives = 99/207 (47.83%), Query Frame = 3
Query:  291 KDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPGAP----LTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGLVPQWHVRFKGCCHGLVCMEWVKK*MAGSQDTSPL 899
            +D+  G+  G       +PFDT+KV+LQSQP  LP    +Y G +D  +Q+I A+G  GLY+G+ APL   A  N+ LF       +LL S   AP    L+++     G  +G   S +  P EL+KC++Q      G+G     +K   P+ V K + R E GLRG + G +        GC       E   K   G  + + L
Sbjct:   44 EDIVYGSAAGIVGKYIEYPFDTVKVRLQSQPDHLP---LRYTGPLDCFRQSIRADGFLGLYRGISAPLVGAALENSSLFFFERIGRSLLYSSGFAPRDSELSLSALWFTGGFSGAFTSLILTPVELVKCKIQVPDEPGGAGARQRQLK---PIPVIKEIFRHE-GLRGFWHGQLGTLIREAGGCAAWFGSKETTSKWFRGRNERALL 243          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: ORNT2_HUMAN (Mitochondrial ornithine transporter 2 OS=Homo sapiens GN=SLC25A2 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.896e-18
Identity = 64/174 (36.78%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  288 AKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPG----APLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGL 797
            A DL +G  GG A ++ G PFDTIKVK+Q+        P  Y G  D   +T A  G RG YKG G  L    A N++LF   G  +  +R   G    A L+  Q    G+ A    +   CPTEL+KCRLQ    +  SG+  +A  +     V K +L+ +G L G + GL
Sbjct:   10 AIDLTAGAAGGTACVLTGQPFDTIKVKMQT-------FPDLYKGLTDCFLKTYAQVGLRGFYKGTGPALMAYVAENSVLFMCYGFCQQFVRKVAGMDKQAKLSDLQTAAAGSFASAFAALALCPTELVKCRLQTMYEMEMSGK--IAKSHNTIWSVVKGILKKDGPL-GFYHGL 173          
BLAST of DY305804 vs. ExPASy Swiss-Prot
Match: ORNT1_HUMAN (Mitochondrial ornithine transporter 1 OS=Homo sapiens GN=SLC25A15 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.070e-17
Identity = 62/174 (35.63%), Postives = 86/174 (49.43%), Query Frame = 3
Query:  288 AKDLFSGTVGGAAQLICGHPFDTIKVKLQSQPAPLPGQPPKYAGAMDAVKQTIAAEGPRGLYKGMGAPLATVAAFNALLFTVRGQMEALLRSQPG----APLTVNQQIICGAGAGVAVSFLACPTELIKCRLQAQSALAGSGQVGVAVKYGGPVDVAKRVLRSEGGLRGLFKGL 797
            A DL +G  GG A ++ G PFDT+KVK+Q+        P  Y G  D   +T +  G RG YKG    L    A N++LF   G  + ++R   G    A L+  Q    G+ A    + + CPTEL+KCRLQ    +  SG+  +A        V K +LR +G L G + GL
Sbjct:   10 AIDLTAGAAGGTACVLTGQPFDTMKVKMQT-------FPDLYRGLTDCCLKTYSQVGFRGFYKGTSPALIANIAENSVLFMCYGFCQQVVRKVAGLDKQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMYEMETSGK--IAKSQNTVWSVIKSILRKDGPL-GFYHGL 173          

HSP 2 Score: 21.9422 bits (45), Expect = 1.070e-17
Identity = 19/67 (28.36%), Postives = 23/67 (34.33%), Query Frame = 2
Query:  779 GSLQGPGPTMAREVQGMLPWFGVY---------GMGEKVNGRKPRHLPIGKKEQCFWEVVNLGACFR 952
            G   G   T+ REV G   +FG Y         G  +   G  P  L  G    C W  V    C +
Sbjct:  168 GFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLMLSGGVGGICLWLAVYPVDCIK 234          
The following BLAST results are available for this feature:
BLAST of DY305804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
MCATL_RAT1.657e-2239.31Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCFD_DICDI2.827e-2231.15Mitochondrial substrate carrier family protein D O... [more]
YMC1_YEAST6.298e-2236.31Carrier protein YMC1, mitochondrial OS=Saccharomyc... [more]
MCATL_MOUSE6.298e-2238.73Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCATL_HUMAN8.226e-2238.73Mitochondrial carnitine/acylcarnitine carrier prot... [more]
MCFL_DICDI5.332e-2133.33Mitochondrial substrate carrier family protein L O... [more]
YD1K_SCHPO3.305e-2036.72Uncharacterized mitochondrial carrier C4G9.20c OS=... [more]
ARG13_NEUCR4.990e-1932.85Amino-acid transporter arg-13 OS=Neurospora crassa... [more]
ORNT2_HUMAN1.896e-1836.78Mitochondrial ornithine transporter 2 OS=Homo sapi... [more]
ORNT1_HUMAN1.070e-1735.63Mitochondrial ornithine transporter 1 OS=Homo sapi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2BF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305804 ID=DY305804; Name=DY305804; organism=Citrus sinensis; type=EST; length=1192bp
GCCCATTACCTACCTCCTTCCTTTTTAGTACCTTTTTTTTCTATTGTCAT
TCCTTTTTTTCTCTCATTAAAAAAGTAAACCCGGAAGAAAAAATAAGAAA
AATTAAACCCAGTTCCTTTTTCCTGGCGTATTTTTAATTTGTATACCCTC
CTTTTAATCTAATACTTTGTGTTTTCTCAAATTGAATCATTTGAGGGAAA
CAACTTTTCTCCACTTAGATTCGGTTGCCGTTCTCGGGGCTCTGCTTACT
CCGGTGCCAGTGAGAATCGGCTCTGATGGGAGACATAGCCAAGGATCTAT
TTTCTGGGACTGTTGGAGGGGCAGCACAATTAATATGTGGGCACCCATTT
GATACCATCAAGGTCAAGCTTCAAAGCCAGCCTGCTCCACTCCCTGGCCA
ACCTCCCAAGTATGCTGGTGCCATGGATGCTGTCAAGCAAACCATAGCTG
CCGAAGGGCCAAGGGGCTTGTACAAAGGTATGGGAGCTCCACTAGCTACT
GTTGCCGCTTTTAATGCCCTCCTATTTACAGTGAGAGGACAAATGGAGGC
ACTGCTCAGATCTCAACCTGGTGCCCCACTAACCGTCAACCAGCAGATTA
TTTGCGGGGCTGGGGCTGGTGTTGCTGTTTCTTTTCTTGCTTGCCCCACA
GAATTGATCAAATGCAGGTTGCAAGCCCAAAGTGCATTAGCAGGTTCTGG
CCAAGTTGGTGTGGCAGTGAAGTATGGTGGACCAGTGGATGTGGCTAAGC
GTGTTCTTAGATCAGAAGGCGGTCTTAGGGGTCTCTTCAAGGGCCTGGTC
CCACAATGGCACGTGAGGTTCAAGGGATGCTGCCATGGTTTGGTGTGTAT
GGAATGGGTGAAAAAGTAAATGGCAGGAAGCCAAGACACCTCCCCATTGG
GAAAAAGGAACAGTGTTTTTGGGAGGTGGTTAATCTGGGAGCTTGTTTCC
GGGTTCCCTGGTTACCCCCCTGAAGTTTTTCAAGAGGGGTTTTTCGGGGT
GAATAAATTACAAAATCCCCCAATTCCTCTGGGTTCCTTTGAAGCCCTTT
CAAAAAAATCCCGAAAAACCAAAAGGGGTCGCAAGGGTTTGGTAAAAGGG
GTTTCCCCCCCCGGCCCCGGGGGCCCAAAAAAGGTTTTCCCGCGGCAAAA
GGCGCGCGAGGGTTTCTCCTTTGGGGCCGTAAAAAGAAAGGT
back to top