DY305715

Overview
NameDY305715
Unique NameDY305715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.908e-16
Identity = 64/222 (28.83%), Postives = 103/222 (46.40%), Query Frame = 2
Query:  269 HIHHKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR-----SPIVKINH----------------AARAPPSSSTWES----NNEDSGTRESTQVGILTENGGRNDMESEIGAVERR 859
            +I   S +  I+  + +V   + V+  V+ V + +RR S+        T+ D+     G V  +       +GL   +   + ++ YK+S   V  T+CSVCL ++Q +E L+ +P C H FH+ CID WL SHT CPLCR      P V ++H                A+  P S S  E+    ++ + G R+S +V   +E   RN + +  G    R
Sbjct:    9 YIPSNSTESQILKFTFIVCVPICVILIVLLVLYIMRRNSN--------TNVDWSSLG-GFVPTNNNLSTAELGLSKDIREMLPIVIYKESF-TVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEGNRDSIEVVKESEENDRNSVGTSDGCCSCR 220          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.908e-16
Identity = 49/146 (33.56%), Postives = 76/146 (52.05%), Query Frame = 2
Query:  482 VGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR-----SPIVKINH----------------AARAPPSSSTWE----SNNEDSGTRESTQVGILTENGGRNDMESEIG 844
            +GL   +   + V+ YK+S  +V+ ++CSVCL ++Q +E L+ +P C H FH+ CID WL SHT CPLCR      P + ++H                A+  P S S  E    +++ + G R+S +V   TE   RN + +  G
Sbjct:   85 LGLSKDIREMLPVVIYKESF-IVKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQSATEAISHTDDVEEGNRDSQEVSKETEENDRNSVGTSDG 229          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5N_ARATH (Putative RING-H2 finger protein ATL5N OS=Arabidopsis thaliana GN=ATL5N PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.491e-16
Identity = 57/202 (28.22%), Postives = 101/202 (50.00%), Query Frame = 2
Query:  248 SPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFVK--FYLRRRSSSEPRI-LNETHDDFLDEDHGPVVDHPIWY-INTVGLQSSVIREIAVLKYKKSDGLVEG-TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTENGGRNDMESE 838
            S ++F Y         LI   S +V   + +L  + FV    +L  +    P+  L++ +D   +        +   + ++   +  S I  + +L YK   GL    ++C+VCL EF  ++ LRLLPKC+HAFH+ CIDTWL +++ CPLCR  ++ +     A  S+      ++   +++S    +LT+    +D+ES+
Sbjct:   12 SSISFSYSSSTDKDFDLICMISPIVLLYITLLSIIFFVAALIHLLVKFLHRPQTRLDDAYDGITESSTALQGRYQTRFNLHDAEIDQSFIDALPLLHYKTMIGLRHDLSDCAVCLREFTAEDELRLLPKCSHAFHVECIDTWLLTNSTCPLCRDNLLLLGLTGTASSSTIVLVHESDGDNSQDSDSSFMLTD---LDDVESK 210          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2K_ARATH (RING-H2 finger protein ATL2K OS=Arabidopsis thaliana GN=ATL2K PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.250e-16
Identity = 50/138 (36.23%), Postives = 69/138 (50.00%), Query Frame = 2
Query:  284 SRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYK-KSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 694
            S K  ++T  +    I+ V  Y ++ KF L RRS+            F D     V   P       GL S VI  +       K+D  V GTEC+VCLS  +E +  R+LP C H FH+SC+DTWL + + CP+CR+
Sbjct:   25 SSKIFLVTTVSFSIIIIIVFVYYLYAKFVLHRRSA------------FQDLSFSVVSQPP-----KRGLDSLVIASLPTFVVGIKND--VAGTECAVCLSLLEEKDNARMLPNCKHVFHVSCVDTWLTTQSTCPVCRT 143          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2G_ARATH (RING-H2 finger protein ATL2G OS=Arabidopsis thaliana GN=ATL2G PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.550e-16
Identity = 54/162 (33.33%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  317 LVTTIVAVLCYVVFVKFYLRRRSS--SEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGL---VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTREST 787
            ++T +  V+ ++VF   + RR ++  S   I   T  D   +    VV   I  +   GL +  I       Y +   +     G EC+VCL EF++DETLRL+P C H FH  C+D WL  H+ CPLCR+ +V +N   +     ST   +  D GT  S+
Sbjct:   54 VITVLFLVIFFMVFGSIFCRRSNAQFSRSSIFRSTDADAESQ----VVR--IRRLTARGLDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVWLSEHSTCPLCRADLV-LNQ--QGDDDDSTESYSGTDPGTISSS 206          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1M_ARATH (RING-H2 finger protein ATL1M OS=Arabidopsis thaliana GN=ATL1M PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.550e-16
Identity = 37/100 (37.00%), Postives = 61/100 (61.00%), Query Frame = 2
Query:  473 INTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSG 772
            ++  GL S +++ I V+ +K +D   +G EC+VCLS+  + +  R+LP+CNH FH+ CID W +SH+ CPLCR+ +  +        S    ++ N +SG
Sbjct:   91 LHNAGLDSKILQSIHVVVFKCTD-FKDGLECAVCLSDLVDGDKARVLPRCNHGFHVDCIDMWFQSHSTCPLCRNTVGSVEDTTHG-GSEGLPQNQNFESG 188          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 7.249e-16
Identity = 50/190 (26.32%), Postives = 93/190 (48.95%), Query Frame = 2
Query:  302 ITASALVTTIVAVLCYVVFV-------KFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWY--------------INTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAA-----RAPPSSST--WESNNEDSGTREST 787
            +T+  ++T I+ +   V+FV       K Y  R    + +   +  +   +ED   +    +                ++  GL S  +  + ++ +++ D   +G ECS+CLSE  + +  RLLPKCNH+FH+ CID W +SH+ CP+CR+ ++    A+     + P ++      +NN D+ ++ ST
Sbjct:   20 VTSKIILTAIIVLFMAVLFVLILHLYAKLYWWRIDQLQQQQQQQQQEQEQEEDQSSIAPPVVTRRQRRRFIFVPGQDALSNTGLTSFELSSLPIVFFRQ-DSCKDGLECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAENAGTTNNNHDALSQLST 208          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1R_ARATH (RING-H2 finger protein ATL1R OS=Arabidopsis thaliana GN=ATL1R PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 1.615e-15
Identity = 50/152 (32.89%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  296 LIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEG-TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKIN-HAARAPPSSST 745
            L++  + L+  +  ++  +   +    RR +S  R          D+ H P    P+   N  GL+  V+R +  L Y       E   EC++CL+EF   + LR+LP+C H FH+SCIDTWL SH++CP CR  +V    H     P SS+
Sbjct:   28 LVLILAVLLCALTCIIGLIAVSRCAWLRRIASRNRS---------DQTHPP----PVAAANK-GLKKKVLRSLPKLTYSPDSPPAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHSSCPSCRQILVVTRCHKCGGLPGSSS 165          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1H_ARATH (RING-H2 finger protein ATL1H OS=Arabidopsis thaliana GN=ATL1H PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.615e-15
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 2
Query:  299 IITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLV---EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            +I A  + T + ++L   V  K+     +++ P   + T  D  +  HG V         + GL   VI       Y +  GL     G EC++CL+EF+++ETLRL+P C+HAFH SCID WL S + CP+CR+ +
Sbjct:   48 VIIAMLMFTLLFSMLACCVCYKY-----TNTSP---HGTSSDTEEGGHGEVA---FTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKGGVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASL 173          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3J_ARATH (RING-H2 finger protein ATL3J OS=Arabidopsis thaliana GN=ATL3J PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.109e-15
Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  491 QSSVIREIAVLKY----KKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILTENGGRNDMESEIGAVERRNIT 868
            +SSV+  + + K+    ++S  +  G +C+VCLS+F+ ++ LRLLP C HAFH  CID WL S+  CPLCRSP+                     +S   +S  V      GG N    EIG++ RR  T
Sbjct:   90 RSSVLDSLPIFKFSSVTRRSSSMNSG-DCAVCLSKFEPEDQLRLLPLCCHAFHADCIDIWLVSNQTCPLCRSPLFA------------------SESDLMKSLAVVGSNNGGGENSFRLEIGSISRRRQT 200          
The following BLAST results are available for this feature:
BLAST of DY305715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL4F_ARATH1.908e-1628.83RING-H2 finger protein ATL4F OS=Arabidopsis thalia... [more]
ATL4E_ARATH1.908e-1633.56RING-H2 finger protein ATL4E OS=Arabidopsis thalia... [more]
ATL5N_ARATH2.491e-1628.22Putative RING-H2 finger protein ATL5N OS=Arabidops... [more]
ATL2K_ARATH4.250e-1636.23RING-H2 finger protein ATL2K OS=Arabidopsis thalia... [more]
ATL2G_ARATH5.550e-1633.33RING-H2 finger protein ATL2G OS=Arabidopsis thalia... [more]
ATL1M_ARATH5.550e-1637.00RING-H2 finger protein ATL1M OS=Arabidopsis thalia... [more]
ATL1P_ARATH7.249e-1626.32RING-H2 finger protein ATL1P OS=Arabidopsis thalia... [more]
ATL1R_ARATH1.615e-1532.89RING-H2 finger protein ATL1R OS=Arabidopsis thalia... [more]
ATL1H_ARATH1.615e-1535.04RING-H2 finger protein ATL1H OS=Arabidopsis thalia... [more]
ATL3J_ARATH2.109e-1536.15RING-H2 finger protein ATL3J OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305715 ID=DY305715; Name=DY305715; organism=Citrus sinensis; type=EST; length=1258bp
CTTTTTTCTCTCTCCTTCTTTCTGTTTCTTCTCTTTTTTTTGATGTTTTC
ATTTTCTTGATAACATGGAGTTGCAGCTGCAACGACATAGAAAGTTCATA
AAATATTCAATCAACGAGGCAGCAACGGCAGATATATGTCCATCATATTG
TGACTTATCTGATACATCAAGCTTTTGTAGCCCACCATGTTTAACTTCTT
GTCCAAGCTACTGCCACAATTTTTTGCAATCCCTAATCCCTACTCCCAGT
CCAGTGACATTCAAATATCATATTCATCACAAATCTCGCAAGTTCTTGAT
CATTACAGCCTCAGCTCTGGTTACAACGATTGTTGCAGTTTTATGTTATG
TTGTTTTTGTTAAGTTCTATTTAAGAAGGAGATCATCATCGGAGCCGCGA
ATACTAAACGAAACCCATGATGATTTTCTTGATGAGGATCATGGCCCTGT
GGTTGATCACCCAATCTGGTACATCAACACCGTTGGTCTGCAGTCATCGG
TCATTAGAGAGATCGCTGTTTTGAAGTATAAAAAAAGTGATGGTCTTGTT
GAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAC
TCTAAGGCTTTTGCCAAAATGCAATCATGCTTTTCACATATCTTGTATTG
ACACCTGGCTTAGATCACACACCAATTGTCCATTGTGCCGTTCTCCTATT
GTCAAGATCAACCATGCAGCTAGAGCACCACCATCATCATCAACATGGGA
GTCGAATAATGAGGATTCAGGCACTAGAGAAAGTACCCAAGTGGGTATTT
TGACAGAAAATGGTGGTAGAAATGACATGGAGTCGGAAATTGGTGCCGTT
GAAAGGCGGAATATAACGAAAGAAATGATCAAGATTCTGATGACGAGATA
CAACAATAAGAAGATCAGTTTCCTTGGAATCCTTAACAGCCTCCAAGATG
AATCCTGCTCTTGGGAAATTTTGATCCTGGAAAAACTTACAAAAATTTCA
AAAAACCAGTTTGGGTAAAGAGAAAAAAATTTGAATGGTGGAAACTGGTT
CCCAAAAAAATTTGGAAAAAAATGGAAAGCTTGATTAAAACCCCTTTGTG
AAAAAGGGGCCCGGTGGTTACTTAAAAAAAAGGGTCGTTTATTCCCGGGG
GGGGGGCAAAATTTTCCTTTGTTTATAAAAAAAAAACAAGCCCCAAAAAA
CCCCAGGAGAAAAACCATTTTTTTTTTTTTTTTTTTCCCCAAAAAAATTA
AAACCCAC
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