DY305715

Overview
NameDY305715
Unique NameDY305715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4C_ARATH (Putative RING-H2 finger protein ATL4C OS=Arabidopsis thaliana GN=ATL4C PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.978e-14
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLV---EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 694
            GL+  VI       Y +  GL     G EC++CLSEF++ ETLR +P C+H FH +CID WL S + CP+CR+
Sbjct:   94 GLEKEVIESFPTFLYSEVKGLKIGKGGVECAICLSEFEDQETLRWMPPCSHTFHANCIDVWLSSWSTCPVCRA 166          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4B_ARATH (Putative RING-H2 finger protein ATL4B OS=Arabidopsis thaliana GN=ATL4B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.978e-14
Identity = 38/107 (35.51%), Postives = 56/107 (52.34%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLV---EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVG 796
            GL+  ++    +  Y +  GL     G EC++CLSEF + ETLR +P C+H FH +CID WL S + CP CR+ +  +      P   +  E+ NE        Q+G
Sbjct:   94 GLEKELVESFPIFLYSEVKGLKIGKGGVECAICLSEFVDKETLRWMPPCSHTFHANCIDVWLSSQSTCPACRANL-SLKPGESYPYPITDLETGNEQRDEHSLLQLG 199          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3E_ARATH (Putative RING-H2 finger protein ATL3E OS=Arabidopsis thaliana GN=ATL3E PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.785e-14
Identity = 37/96 (38.54%), Postives = 55/96 (57.29%), Query Frame = 2
Query:  413 THDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            THDD  D D+       I     VG++  V+R I ++ +   D      EC VCLSE  + +  R+LP C+H FH+ CID+WL+S++ CP+CR  +
Sbjct:   39 THDDDHDHDNNNDGHVSITIKERVGIKPYVLRSIPIVDFNTKD-FKYVLECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICRKRV 133          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2L_ARATH (RING-H2 finger protein ATL2L OS=Arabidopsis thaliana GN=ATL2L PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.785e-14
Identity = 44/153 (28.76%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  245 PSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLV-EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            P+P T+  +      K ++   ++L   I+ V    ++ +F LRRR  +   +              PV+    + +   GL  +VI  +       +DG+    TEC+VCLS  +E +  R LP C H FH+ C+DTWL + + CP+CR+ +
Sbjct:   20 PNPSTYDLN-----SKIMLAAVASLSGVILIVFALHLYARFVLRRRREAFRGL--------------PVIFRHPFEMPKRGLNPTVIASLPTFTVGATDGVAASATECAVCLSVLKEQDKARELPNCKHIFHVDCVDTWLTTCSTCPVCRTEV 153          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5H_ARATH (RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.861e-14
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYK--KSDGLVEGT-ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 706
            GL +  I       Y   K+  + +G  EC++CL+EF++DETLRLLPKC+H FH  CI  WL+ H  CP+CR+ + +
Sbjct:   95 GLDAETIETFPTFVYSEVKTQKIGKGALECAICLNEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCRTNLAE 171          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2H_ARATH (RING-H2 finger protein ATL2H OS=Arabidopsis thaliana GN=ATL2H PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 8.861e-14
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 691
            GL   +IR   V  Y  +     GTEC++CLSEF +++T+RL+  C H FH +CID W   H  CP+CR
Sbjct:   77 GLDPFIIRSFPVFHYSSATKKNHGTECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCR 145          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3H_ARATH (Putative RING-H2 finger protein ATL3H OS=Arabidopsis thaliana GN=ATL3H PE=5 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.157e-13
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 2
Query:  431 DEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKI-NHAARAPPSSST 745
            D+DH     H +  I   G+  SV+  I V+ +  ++   +  EC VCLS+F +++  R+LP CNH FH    DTWL S   CP CR  + +I NH     P+ ++
Sbjct:   36 DDDHLIHPSHSLHVIKATGINPSVLLSIPVVSFN-ANAFKDNIECVVCLSKFIDEDKARVLPSCNHCFHFDFTDTWLHSDYTCPNCRKNVEEIQNHELSLSPNPNS 140          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2F_ARATH (RING-H2 finger protein ATL2F OS=Arabidopsis thaliana GN=ATL2F PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.157e-13
Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = 2
Query:  302 ITASALVTTIVAVLCYVVFVKFYLRR--RSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKY---KKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 691
            I AS L   ++ ++ + +F+        R +S      E+ + F D D    V+         GL  ++I       Y   K+    + G EC+VC+ EF++ ETLRL+P+C H FH  C+  WL  H+ CPLCR
Sbjct:    8 IKASDLTLLVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSD----VESRTSITAVRGLDEAIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDHSTCPLCR 138          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1I_ARATH (RING-H2 finger protein ATL1I OS=Arabidopsis thaliana GN=ATL1I PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.157e-13
Identity = 51/171 (29.82%), Postives = 78/171 (45.61%), Query Frame = 2
Query:  215 HNFLQSLIPTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTV------GLQSSVIREIAVLKYKKSDGLVE-GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 706
            HN  ++    PSP+    H ++ S   L++  S L+  I+  L     ++   RR SS                    ++  PI  ++T       G+    +R   V+ Y     L   G EC +CLS+F   E +R+LPKC+H FH+ CID WL+ H  CP CR  +V+
Sbjct:   35 HNTQRAFAVAPSPLIT--HENNLSGNVLMLL-SVLICGIICCLGLHYIIRCAFRRTSSF-------------------MISEPIAGLSTPCGSSNKGINKKALRMFPVVSYSPEMNLPGLGEECVICLSDFVSGEQIRMLPKCHHGFHVRCIDKWLQQHLTCPKCRHCLVE 183          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: EL5_ORYSJ (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.512e-13
Identity = 33/83 (39.76%), Postives = 46/83 (55.42%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLV----------EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 703
            G+   V+R + V  Y +S              +G EC+VCL+E ++ E  R LP+C H FH  C+D WL SH+ CPLCR  +V
Sbjct:   98 GVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 180          
The following BLAST results are available for this feature:
BLAST of DY305715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL4C_ARATH3.978e-1446.58Putative RING-H2 finger protein ATL4C OS=Arabidops... [more]
ATL4B_ARATH3.978e-1435.51Putative RING-H2 finger protein ATL4B OS=Arabidops... [more]
ATL3E_ARATH6.785e-1438.54Putative RING-H2 finger protein ATL3E OS=Arabidops... [more]
ATL2L_ARATH6.785e-1428.76RING-H2 finger protein ATL2L OS=Arabidopsis thalia... [more]
ATL5H_ARATH8.861e-1444.16RING-H2 finger protein ATL5H OS=Arabidopsis thalia... [more]
ATL2H_ARATH8.861e-1444.93RING-H2 finger protein ATL2H OS=Arabidopsis thalia... [more]
ATL3H_ARATH1.157e-1335.85Putative RING-H2 finger protein ATL3H OS=Arabidops... [more]
ATL2F_ARATH1.157e-1331.85RING-H2 finger protein ATL2F OS=Arabidopsis thalia... [more]
ATL1I_ARATH1.157e-1329.82RING-H2 finger protein ATL1I OS=Arabidopsis thalia... [more]
EL5_ORYSJ1.512e-1339.76E3 ubiquitin-protein ligase EL5 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305715 ID=DY305715; Name=DY305715; organism=Citrus sinensis; type=EST; length=1258bp
CTTTTTTCTCTCTCCTTCTTTCTGTTTCTTCTCTTTTTTTTGATGTTTTC
ATTTTCTTGATAACATGGAGTTGCAGCTGCAACGACATAGAAAGTTCATA
AAATATTCAATCAACGAGGCAGCAACGGCAGATATATGTCCATCATATTG
TGACTTATCTGATACATCAAGCTTTTGTAGCCCACCATGTTTAACTTCTT
GTCCAAGCTACTGCCACAATTTTTTGCAATCCCTAATCCCTACTCCCAGT
CCAGTGACATTCAAATATCATATTCATCACAAATCTCGCAAGTTCTTGAT
CATTACAGCCTCAGCTCTGGTTACAACGATTGTTGCAGTTTTATGTTATG
TTGTTTTTGTTAAGTTCTATTTAAGAAGGAGATCATCATCGGAGCCGCGA
ATACTAAACGAAACCCATGATGATTTTCTTGATGAGGATCATGGCCCTGT
GGTTGATCACCCAATCTGGTACATCAACACCGTTGGTCTGCAGTCATCGG
TCATTAGAGAGATCGCTGTTTTGAAGTATAAAAAAAGTGATGGTCTTGTT
GAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAC
TCTAAGGCTTTTGCCAAAATGCAATCATGCTTTTCACATATCTTGTATTG
ACACCTGGCTTAGATCACACACCAATTGTCCATTGTGCCGTTCTCCTATT
GTCAAGATCAACCATGCAGCTAGAGCACCACCATCATCATCAACATGGGA
GTCGAATAATGAGGATTCAGGCACTAGAGAAAGTACCCAAGTGGGTATTT
TGACAGAAAATGGTGGTAGAAATGACATGGAGTCGGAAATTGGTGCCGTT
GAAAGGCGGAATATAACGAAAGAAATGATCAAGATTCTGATGACGAGATA
CAACAATAAGAAGATCAGTTTCCTTGGAATCCTTAACAGCCTCCAAGATG
AATCCTGCTCTTGGGAAATTTTGATCCTGGAAAAACTTACAAAAATTTCA
AAAAACCAGTTTGGGTAAAGAGAAAAAAATTTGAATGGTGGAAACTGGTT
CCCAAAAAAATTTGGAAAAAAATGGAAAGCTTGATTAAAACCCCTTTGTG
AAAAAGGGGCCCGGTGGTTACTTAAAAAAAAGGGTCGTTTATTCCCGGGG
GGGGGGCAAAATTTTCCTTTGTTTATAAAAAAAAAACAAGCCCCAAAAAA
CCCCAGGAGAAAAACCATTTTTTTTTTTTTTTTTTTCCCCAAAAAAATTA
AAACCCAC
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