DY305715

Overview
NameDY305715
Unique NameDY305715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4A_ARATH (RING-H2 finger protein ATL4A OS=Arabidopsis thaliana GN=ATL4A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.512e-13
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLVEGT---ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 703
            GL +  I+      Y ++ G+  G    EC VCL+EF++DETLRL+P C H FH  C+D WL   + CP+CR+ +V
Sbjct:   56 GLDAEAIKSFPSFVYTEARGIEPGIGELECVVCLNEFKDDETLRLVPPCVHVFHADCVDIWLSHSSTCPICRAKVV 131          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3G_ARATH (RING-H2 finger protein ATL3G OS=Arabidopsis thaliana GN=ATL3G PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.512e-13
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKY-------KKSDGLVEGT---ECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 703
            GL  SVI+ + +  Y       K + G        +C+VCL EF+E + +R LP C HAFH+ CID WLRSH NCPLCR+ I+
Sbjct:  120 GLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAIL 202          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1L_ARATH (RING-H2 finger protein ATL1L OS=Arabidopsis thaliana GN=ATL1L PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.974e-13
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 2
Query:  455 DHPIWYINTVGLQSSVIREIAVLKYKKSDGLVE-GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVK 706
            ++P+   NT G++   ++    + Y     L    TEC++CLSEF  +E ++LLP C+H FH+ CID WL SH++CP CR  +++
Sbjct:   95 NYPVRLTNT-GVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCLIQ 178          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4D_ARATH (Putative RING-H2 finger protein ATL4D OS=Arabidopsis thaliana GN=ATL4D PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 34/84 (40.48%), Postives = 49/84 (58.33%), Query Frame = 2
Query:  554 GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQVGILT 805
            G EC++CL EF+++E LR +P C+H FH +CID WL S + CP+CR+ +  +      P  S   E+ N   G +ES     LT
Sbjct:  117 GVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANL-SLKSGDSFPHPSMDVETGNAQRGVQESPDERSLT 199          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2J_ARATH (RING-H2 finger protein ATL2J OS=Arabidopsis thaliana GN=ATL2J PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 46/132 (34.85%), Postives = 63/132 (47.73%), Query Frame = 2
Query:  377 RRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSG 772
            RR+SS  R  + + D      H  V   PI        +++V  E     +K +     G ECSVCL  F + + LR L +C HAFH+ CI+TWL+ H NCP+CR+  V +     AP        N   SG
Sbjct:   91 RRNSSSSRTSSSSDDT----PHATVDTPPI-------TETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTD-VSVKQQTEAPNVPVNVNGNVNRSG 210          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2I_ARATH (RING-H2 finger protein ATL2I OS=Arabidopsis thaliana GN=ATL2I PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 50/171 (29.24%), Postives = 73/171 (42.69%), Query Frame = 2
Query:  182 PPCLTSCPSYCHNFLQSLIPTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 694
            PP  +  P Y       L+ T     F+Y I       + I    L+TTI     Y        R + SS P   N+         H  ++D         GL    I+    + Y ++ G    + C++CL +++    LR LP CNH FH+ CIDTWLR +  CP+CR+
Sbjct:   43 PPPPSEMPDY-----NGLLGTDDIGGFRYGIG------VSIGVLLLITTITLTSYYCT------RNQLSSSPSQTNQDSTRIHHHHHHVIIDV------VPGLDEDTIQSYPKILYSEAKGPTTASCCAICLGDYKGKHLLRQLPDCNHLFHLKCIDTWLRLNPTCPVCRT 190          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.578e-13
Identity = 47/163 (28.83%), Postives = 83/163 (50.92%), Query Frame = 2
Query:  314 ALVTTIVAVLCYVVFVKFYL--RRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV-KINHAARAPPSSSTWESNNEDSGTRESTQV 793
            A + ++     +++   FYL   RRSSS+   L      F+  +    ++        +GL   +   + ++ +K+S  +++ ++CSVCL ++Q ++ L+ +P C H FH+ CID WL SHT CPLCR  ++   +  ++  P  S    + E S   ES  V
Sbjct:   25 AFIFSVPICFTFIILFLFYLIYLRRSSSDLSSLG-MRTTFIPGNSLSTIE--------LGLSKELREMLPIVVFKESFTVMD-SQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALIPSRSRQSQDDPVPSLVSPDEEVSSQPESEPV 177          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL2M_ARATH (RING-H2 finger protein ATL2M OS=Arabidopsis thaliana GN=ATL2M PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.367e-13
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  395 PRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKK------SDGLVEG--TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 694
            PRI+    +D  D + G VV         VGL  +VI       + K      SDG   G  T CS+CL E++E E LR++P+C H FH+ C+D WL+ + +CP+CR+
Sbjct:   83 PRIIFVAEEDNEDLEAGDVV---------VGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRMMPECKHYFHLCCLDAWLKLNGSCPVCRN 181          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.398e-13
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 2
Query:  434 EDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 691
            +DH  + D  I    + GL    +  I   K + +D   E   CSVCL +FQ  ET+R LP C+H FH+ CID WLR H +CPLCR
Sbjct:  139 QDHTDIFDTAI----SKGLTGDSLNRIP--KVRITDTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPLCR 218          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4L_ARATH (RING-H2 finger protein ATL4L OS=Arabidopsis thaliana GN=ATL4L PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.744e-13
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  557 TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNED 766
            TEC++C++EF E E +R+LP C+HAFH++CID WL S ++CP CR  +V +    R    +ST E+  +D
Sbjct:  111 TECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVPVK-CDRCGHHASTAETQVKD 179          
The following BLAST results are available for this feature:
BLAST of DY305715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL4A_ARATH1.512e-1343.42RING-H2 finger protein ATL4A OS=Arabidopsis thalia... [more]
ATL3G_ARATH1.512e-1345.78RING-H2 finger protein ATL3G OS=Arabidopsis thalia... [more]
ATL1L_ARATH1.974e-1338.82RING-H2 finger protein ATL1L OS=Arabidopsis thalia... [more]
ATL4D_ARATH2.578e-1340.48Putative RING-H2 finger protein ATL4D OS=Arabidops... [more]
ATL2J_ARATH2.578e-1334.85RING-H2 finger protein ATL2J OS=Arabidopsis thalia... [more]
ATL2I_ARATH2.578e-1329.24RING-H2 finger protein ATL2I OS=Arabidopsis thalia... [more]
ATL1G_ARATH2.578e-1328.83RING-H2 finger protein ATL1G OS=Arabidopsis thalia... [more]
ATL2M_ARATH3.367e-1337.96RING-H2 finger protein ATL2M OS=Arabidopsis thalia... [more]
ATL5P_ARATH4.398e-1344.19RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
ATL4L_ARATH5.744e-1345.71RING-H2 finger protein ATL4L OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305715 ID=DY305715; Name=DY305715; organism=Citrus sinensis; type=EST; length=1258bp
CTTTTTTCTCTCTCCTTCTTTCTGTTTCTTCTCTTTTTTTTGATGTTTTC
ATTTTCTTGATAACATGGAGTTGCAGCTGCAACGACATAGAAAGTTCATA
AAATATTCAATCAACGAGGCAGCAACGGCAGATATATGTCCATCATATTG
TGACTTATCTGATACATCAAGCTTTTGTAGCCCACCATGTTTAACTTCTT
GTCCAAGCTACTGCCACAATTTTTTGCAATCCCTAATCCCTACTCCCAGT
CCAGTGACATTCAAATATCATATTCATCACAAATCTCGCAAGTTCTTGAT
CATTACAGCCTCAGCTCTGGTTACAACGATTGTTGCAGTTTTATGTTATG
TTGTTTTTGTTAAGTTCTATTTAAGAAGGAGATCATCATCGGAGCCGCGA
ATACTAAACGAAACCCATGATGATTTTCTTGATGAGGATCATGGCCCTGT
GGTTGATCACCCAATCTGGTACATCAACACCGTTGGTCTGCAGTCATCGG
TCATTAGAGAGATCGCTGTTTTGAAGTATAAAAAAAGTGATGGTCTTGTT
GAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAC
TCTAAGGCTTTTGCCAAAATGCAATCATGCTTTTCACATATCTTGTATTG
ACACCTGGCTTAGATCACACACCAATTGTCCATTGTGCCGTTCTCCTATT
GTCAAGATCAACCATGCAGCTAGAGCACCACCATCATCATCAACATGGGA
GTCGAATAATGAGGATTCAGGCACTAGAGAAAGTACCCAAGTGGGTATTT
TGACAGAAAATGGTGGTAGAAATGACATGGAGTCGGAAATTGGTGCCGTT
GAAAGGCGGAATATAACGAAAGAAATGATCAAGATTCTGATGACGAGATA
CAACAATAAGAAGATCAGTTTCCTTGGAATCCTTAACAGCCTCCAAGATG
AATCCTGCTCTTGGGAAATTTTGATCCTGGAAAAACTTACAAAAATTTCA
AAAAACCAGTTTGGGTAAAGAGAAAAAAATTTGAATGGTGGAAACTGGTT
CCCAAAAAAATTTGGAAAAAAATGGAAAGCTTGATTAAAACCCCTTTGTG
AAAAAGGGGCCCGGTGGTTACTTAAAAAAAAGGGTCGTTTATTCCCGGGG
GGGGGGCAAAATTTTCCTTTGTTTATAAAAAAAAAACAAGCCCCAAAAAA
CCCCAGGAGAAAAACCATTTTTTTTTTTTTTTTTTTCCCCAAAAAAATTA
AAACCCAC
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