DY305715

Overview
NameDY305715
Unique NameDY305715
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1F_ARATH (RING-H2 finger protein ATL1F OS=Arabidopsis thaliana GN=ATL1F PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 7.502e-13
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  482 VGLQSSVIREIAVLKYKKSDGLVEGTE-CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 691
            +GL S +I       Y   D    GT+ CS+CL+EF +D+T+RL+  CNH+FH  CID W   H  CP+CR
Sbjct:  129 LGLDSKIIESFPEYPYSVKD---HGTDQCSICLTEFMDDDTIRLISTCNHSFHTICIDLWFEGHKTCPVCR 196          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL1E_ARATH (RING-H2 finger protein ATL1E OS=Arabidopsis thaliana GN=ATL1E PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 9.797e-13
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 2
Query:  296 LIITA---SALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGL--VEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 694
            LIIT      +  T +A +      +F  +RR ++     N T      +  G VV        T GL  S I     ++  +S  L    G  C +CLSE+   ET+R +P+C+H FH+ CID WL+ H++CP+CR+
Sbjct:  172 LIITLCIIGGITATCIAAIRIYNSERFVNQRRQNAAITARNTTQ-----QPRGVVV--------TTGLDQSTIESYKKVELGESRRLPGTNGIICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVCRN 296          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5L_ARATH (Putative RING-H2 finger protein ATL5L OS=Arabidopsis thaliana GN=ATL5L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.671e-12
Identity = 68/265 (25.66%), Postives = 107/265 (40.38%), Query Frame = 2
Query:  239 PTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRS-SSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVE---GTECSVCLSEFQEDETL-RLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPS---------SSTWESNNEDSGTRESTQVGILTENGGRNDMESE-----------IGAVERRNITKEMIKILMTRYNNKKISFLGILNSLQDESC 958
            P     T  Y   H S+  L+I    ++T I+ V+ ++ F   Y  +    +     N  + + L E+       P+      GL+  +I+   +  +     L E   G EC++CL EF+E+  L RLL  C H FH  CID WL S+  CP+CR      N    AP +               N +   T  S +V +  ++ G N+ + E            G    RN  +E  +  +   ++ KI      N+ Q ESC
Sbjct:    6 PINQNTTVPYPPQHYSKPPLVI----ILTVILLVVFFIGFFAIYFCKCFYHTLTEAWNHHYHNGLPENQIQAQQEPVQPPVNPGLEPHIIQSYPLFPFSSVKDLREDKYGLECAICLLEFEEEHILLRLLTTCYHVFHQECIDQWLESNKTCPVCRR-----NLDPNAPENIKELIIEVIQENAHENRDQEQTSTSNEVMLSRQSSGNNERKIETLPDKFSRSKTTGHSIVRNKPEEEDRYTLRLPDHVKIKVTRRHNNNQTESC 261          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL3K_ARATH (RING-H2 finger protein ATL3K OS=Arabidopsis thaliana GN=ATL3K PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.671e-12
Identity = 45/127 (35.43%), Postives = 64/127 (50.39%), Query Frame = 2
Query:  395 PRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKS-------DGLVEG----TECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR-SPIVKINHAARAPPSS 739
            PRI+    DD  D + G VV          GL  SVI       + K        DG  +G    T CS+CL E+ E+E LR++P+C H FH+ C+D WL+ + +CP+CR SP+       ++ P S
Sbjct:   79 PRIIFVAEDD--DLESGNVV--------VGGLDHSVINSYPKFHFTKDITAVVNGDGFHDGEGRETTCSICLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLS 195          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5O_ARATH (RING-H2 finger protein ATL5O OS=Arabidopsis thaliana GN=ATL5O PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.862e-12
Identity = 33/74 (44.59%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLV-EGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIV 703
            GL SSVI  I +  Y++++    E  EC +CL  ++  +  R L  C H FH+ CID WL SH+ CPLCRSP++
Sbjct:  111 GLDSSVISSIPLFVYEENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVL 184          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5J_ARATH (RING-H2 finger protein ATL5J OS=Arabidopsis thaliana GN=ATL5J PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 8.294e-12
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 2
Query:  461 PIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            P+  +   GL    + +I  L  ++   +   TEC+VCL + +  ++ RL+P CNH FH  C DTWL +HT CP+CR+ +
Sbjct:   70 PVKPVTGKGLSVLELEKIPKLTGRELAVIARSTECAVCLEDIESGQSTRLVPGCNHGFHQLCADTWLSNHTVCPVCRAEL 149          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5D_ARATH (Putative RING-H2 finger protein ATL5D OS=Arabidopsis thaliana GN=ATL5D PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.294e-12
Identity = 38/114 (33.33%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  374 RRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKK---SDGLVEGTE----CSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRS 694
            R+R S+      +   DF D++   VV      +  +GL   VI+    L Y++   S  L + +     CS+CL+++++ + +R+LP CNH FH +C+D WLR H  CP+CR+
Sbjct:   65 RQRESNGTLPPGQERFDFEDDESDTVV------VEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKMDMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRT 172          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL5M_ARATH (RING-H2 finger protein ATL5M OS=Arabidopsis thaliana GN=ATL5M PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.083e-11
Identity = 46/154 (29.87%), Postives = 72/154 (46.75%), Query Frame = 2
Query:  239 PTPSPVTFKYHIHHKSRKFLIITASALVTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPI 700
            PT +  T ++  +  S  F   TA+A V  I+ +   +  +  Y   R    P +  ET DD   +        P     T  L  S   E+A  +           EC++CLSEF++ E++++L KC H FH+ CI  WL + ++CP CR+ I
Sbjct:   18 PTCNSHTCRWKPYSNSTDF---TANASVLLILVISALICALSLYAAIRCFLRPTL--ETEDDHKPDPEAAASSTP----TTPTLVYSSDLELAGAE----------AECAICLSEFEQGESIQVLEKCQHGFHVKCIHKWLSTRSSCPTCRTSI 152          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: RHA4A_ARATH (RING-H2 zinc finger protein RHA4a OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.152e-11
Identity = 49/187 (26.20%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  233 LIPTPSPVTFKYHIHHKSRKFLIITASAL-VTTIVAVLCYVVFVKFYLRRRSSSEPRILNETHDDFLDEDHGPVVDHPIWYINTVGLQSSVIREIAVLKYKKSDGLVEGTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCRSPIVKINHAARAPPSSSTWESNNEDSGTRESTQ 790
            ++   SP+T   H++ ++ +  +  A    +  + +++ +++F  FYL+RR+SS    L+      L           +  +  + ++  +  ++ V+ + +  G  +   C VCL EF+  E L  +P C H FH+ CI  WL SH  CPLCRS +            SST  S ++D+   +S Q
Sbjct:    1 MVDPQSPIT--PHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASS----LSSPSPMILPVSSSHQTSSHLPSVCLLDVKVELKDKLHVVLFNEELGTRDSL-CCVCLGEFELKEELVEMPLCKHIFHLDCIHLWLYSHNTCPLCRSSV----------SISSTKTSVDDDNDHPDSPQ 170          
BLAST of DY305715 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.152e-11
Identity = 32/72 (44.44%), Postives = 37/72 (51.39%), Query Frame = 2
Query:  485 GLQSSVIREIAVLKYKKSDGLVE---GTECSVCLSEFQEDETLRLLPKCNHAFHISCIDTWLRSHTNCPLCR 691
            GL+  +I       Y     L E   G EC++CL EF  D  LRLL  C H FH  CID W  SH  CP+CR
Sbjct:   81 GLELRIINSFPTFPYSSVKDLREEKYGLECAICLLEFDGDHVLRLLTTCYHVFHQECIDLWFESHRTCPVCR 152          
The following BLAST results are available for this feature:
BLAST of DY305715 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
ATL1F_ARATH7.502e-1345.07RING-H2 finger protein ATL1F OS=Arabidopsis thalia... [more]
ATL1E_ARATH9.797e-1332.61RING-H2 finger protein ATL1E OS=Arabidopsis thalia... [more]
ATL5L_ARATH1.671e-1225.66Putative RING-H2 finger protein ATL5L OS=Arabidops... [more]
ATL3K_ARATH1.671e-1235.43RING-H2 finger protein ATL3K OS=Arabidopsis thalia... [more]
ATL5O_ARATH4.862e-1244.59RING-H2 finger protein ATL5O OS=Arabidopsis thalia... [more]
ATL5J_ARATH8.294e-1237.50RING-H2 finger protein ATL5J OS=Arabidopsis thalia... [more]
ATL5D_ARATH8.294e-1233.33Putative RING-H2 finger protein ATL5D OS=Arabidops... [more]
ATL5M_ARATH1.083e-1129.87RING-H2 finger protein ATL5M OS=Arabidopsis thalia... [more]
RHA4A_ARATH3.152e-1126.20RING-H2 zinc finger protein RHA4a OS=Arabidopsis t... [more]
ATL4I_ARATH3.152e-1144.44Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2AC02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305715 ID=DY305715; Name=DY305715; organism=Citrus sinensis; type=EST; length=1258bp
CTTTTTTCTCTCTCCTTCTTTCTGTTTCTTCTCTTTTTTTTGATGTTTTC
ATTTTCTTGATAACATGGAGTTGCAGCTGCAACGACATAGAAAGTTCATA
AAATATTCAATCAACGAGGCAGCAACGGCAGATATATGTCCATCATATTG
TGACTTATCTGATACATCAAGCTTTTGTAGCCCACCATGTTTAACTTCTT
GTCCAAGCTACTGCCACAATTTTTTGCAATCCCTAATCCCTACTCCCAGT
CCAGTGACATTCAAATATCATATTCATCACAAATCTCGCAAGTTCTTGAT
CATTACAGCCTCAGCTCTGGTTACAACGATTGTTGCAGTTTTATGTTATG
TTGTTTTTGTTAAGTTCTATTTAAGAAGGAGATCATCATCGGAGCCGCGA
ATACTAAACGAAACCCATGATGATTTTCTTGATGAGGATCATGGCCCTGT
GGTTGATCACCCAATCTGGTACATCAACACCGTTGGTCTGCAGTCATCGG
TCATTAGAGAGATCGCTGTTTTGAAGTATAAAAAAAGTGATGGTCTTGTT
GAAGGAACAGAGTGCTCTGTTTGCTTGAGTGAGTTTCAAGAAGATGAGAC
TCTAAGGCTTTTGCCAAAATGCAATCATGCTTTTCACATATCTTGTATTG
ACACCTGGCTTAGATCACACACCAATTGTCCATTGTGCCGTTCTCCTATT
GTCAAGATCAACCATGCAGCTAGAGCACCACCATCATCATCAACATGGGA
GTCGAATAATGAGGATTCAGGCACTAGAGAAAGTACCCAAGTGGGTATTT
TGACAGAAAATGGTGGTAGAAATGACATGGAGTCGGAAATTGGTGCCGTT
GAAAGGCGGAATATAACGAAAGAAATGATCAAGATTCTGATGACGAGATA
CAACAATAAGAAGATCAGTTTCCTTGGAATCCTTAACAGCCTCCAAGATG
AATCCTGCTCTTGGGAAATTTTGATCCTGGAAAAACTTACAAAAATTTCA
AAAAACCAGTTTGGGTAAAGAGAAAAAAATTTGAATGGTGGAAACTGGTT
CCCAAAAAAATTTGGAAAAAAATGGAAAGCTTGATTAAAACCCCTTTGTG
AAAAAGGGGCCCGGTGGTTACTTAAAAAAAAGGGTCGTTTATTCCCGGGG
GGGGGGCAAAATTTTCCTTTGTTTATAAAAAAAAAACAAGCCCCAAAAAA
CCCCAGGAGAAAAACCATTTTTTTTTTTTTTTTTTTCCCCAAAAAAATTA
AAACCCAC
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