EY702617

Overview
NameEY702617
Unique NameEY702617
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9466 contig Csv1_Contig9466:449..1006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANK 156
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  134 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_RAT (ADP-ribosylation factor 1 OS=Rattus norvegicus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANK 156
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  134 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_MOUSE (ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANK 156
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  134 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_MACFA (ADP-ribosylation factor 1 OS=Macaca fascicularis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANK 156
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  134 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_HUMAN (ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANK 156
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  134 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_BOVIN (ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.377e-14
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANK 156
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N+
Sbjct:  134 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ 180
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIAN 153
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N
Sbjct:  134 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIAN 153
            MNAAEITDKLGLHSLR  + YIQ+TCATSG+GLYEGLDWLSN + N
Sbjct:  134 MNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLKN 179
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANKA 159
            MNAAE+TDKLGLHSLR    YIQ+TCATSG+GLYEGLDWLSN + N++
Sbjct:  134 MNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
[Close]
BLAST of EY702617 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 1.799e-14
Identity = 36/48 (75.00%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:   16 MNAAEITDKLGLHSLRLFHRYIQSTCATSGEGLYEGLDWLSNNIANKA 159
            MNAAE+TDKLGLHSLR    YIQ+TCATSG+GLYEGLDWLSN + N++
Sbjct:  134 MNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKNRS 181
The following BLAST results are available for this feature:
BLAST of EY702617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ARF1_XENLA1.377e-1478.72ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]
ARF1_RAT1.377e-1478.72ADP-ribosylation factor 1 OS=Rattus norvegicus GN=... [more]
ARF1_MOUSE1.377e-1478.72ADP-ribosylation factor 1 OS=Mus musculus GN=Arf1 ... [more]
ARF1_MACFA1.377e-1478.72ADP-ribosylation factor 1 OS=Macaca fascicularis G... [more]
ARF1_HUMAN1.377e-1478.72ADP-ribosylation factor 1 OS=Homo sapiens GN=ARF1 ... [more]
ARF1_BOVIN1.377e-1478.72ADP-ribosylation factor 1 OS=Bos taurus GN=ARF1 PE... [more]
ARF1_LOCMI1.799e-1480.43ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME1.799e-1480.43ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF12_CAEEL1.799e-1475.00ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF12_CAEBR1.799e-1475.00ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-010-B07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702617 ID=EY702617; Name=EY702617; organism=Citrus sinensis; type=EST; length=558bp
AGATCTTCCATACCCATGAATGCTGCAGAGATCACTGATAAGCTTGGTCT
TCACTCACTTCGTCTTTTCCACCGGTACATCCAGAGCACATGTGCAACAT
CTGGGGAAGGACTCTATGAGGGTCTGGACTGGCTCTCCAACAACATCGCT
AACAAGGCTTAATTGATTGGTCAAGTCTGAGCGACTCTTTGCGGCAGCAT
CTATGTGAATGATGTTACTATGCTTTTGTTTATTTTGTCGGGGATTCTTT
TTGGGCTTTACTACCTACGTTCAGAAAAATGTATTTGTTTGTGTTAGATA
TTTGATTGGCACCATACTATAAAGTTTTCTGCATTGTCATTGTAGAGCTT
AAATTACCCTCATTATTCAGAATTCAATGATTTTTTGGCTGTTATACCTC
TTAGCTTCTCTTTAGTCTGCAGCGGTGCAGATATACTTTAATCACCAATA
ATTGGCTTATTGATTTGATCTTAATATTGTTCTCAATGTCAGTTTGTATG
TATCTTTTGATTACNGCAAACAGAACTCGAATATTACCTCCGTAATGACC
CTCTTTCA
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