EY702591

Overview
NameEY702591
Unique NameEY702591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.096e-40
Identity = 68/115 (59.13%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK++ND +S+ SNGGR+QCM+VWPP G KK ET SYLPPL+D  LL ++ YLL  GWIPC EF+LE  +V RE+  SP Y DGRYWT  K  +YG TD A  LN V E  + YP
Sbjct:   40 TKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYP 154          

HSP 2 Score: 40.0466 bits (92), Expect = 7.096e-40
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKS 159
            +ASSM+S+  +AT    + AQASMVAPF GLKS
Sbjct:    1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKS 33          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 9.250e-40
Identity = 64/118 (54.24%), Postives = 83/118 (70.34%), Query Frame = 3
Query:  171 GAGTKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            G    K N+DITS+ASNGGR+QCMKVWP   +K+ ET SYLPPL  + L +++ YLL + W+PC EF+ + G+V REH +SP YYDGRYWT  K  ++G TD A  LN + E  +EYP
Sbjct:   35 GFPATKKNDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYP 152          

HSP 2 Score: 44.2838 bits (103), Expect = 9.250e-40
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSSG 168
            +ASS++SS  VAT +R   AQASMVAPFTGLKS+ G
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVG 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.205e-39
Identity = 65/113 (57.52%), Postives = 86/113 (76.11%), Query Frame = 3
Query:  186 KTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            + NNDITS+ASNGGR+QCM+VWPP G+KK ET SYLPPL++E+LLKE+ YLL +GW+PC EF+   G+V REH ++P YYDGRYWT  K  ++G TD +  +  + E  + YP
Sbjct:   41 RKNNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 153          

HSP 2 Score: 36.5798 bits (83), Expect = 1.205e-39
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS++S+     A   + AQA+MVAPF GLKS S
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSIS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.205e-39
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            ++K N DITSIASNGGR+QCM+VWPP   KK ET SYLP L+ E LL E+ YLL++GW+PC EF+ E G+V RE+  SP YYDGRYWT  K  ++G TDA   L  V E  + YP
Sbjct:   38 SRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYP 152          

HSP 2 Score: 42.743 bits (99), Expect = 1.205e-39
Identity = 22/35 (62.86%), Postives = 31/35 (88.57%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS++SS  VAT  R+++AQA+MVAPFTGLKS++
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAA 33          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.205e-39
Identity = 67/115 (58.26%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            ++K N DITSIASNGGR+QCM+VWPP   KK ET SYLP L+ E LL E+ YLL++GW+PC EF+ E G+V RE+  SP YYDGRYWT  K  ++G TDA   L  V E  + YP
Sbjct:   38 SRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYP 152          

HSP 2 Score: 42.743 bits (99), Expect = 1.205e-39
Identity = 22/35 (62.86%), Postives = 31/35 (88.57%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS++SS  VAT  R+++AQA+MVAPFTGLKS++
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAA 33          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.473e-39
Identity = 68/115 (59.13%), Postives = 85/115 (73.91%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            ++K N DITSIASNGGR++CM+VWPP  +KK ET SYLP L DE LLKE+ YLL++GW+PC EF+ E G+V RE+  SP YYDGRYWT  K  ++G TDA   L  V+E  + YP
Sbjct:   39 SRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYP 153          

HSP 2 Score: 37.7354 bits (86), Expect = 3.473e-39
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQA-SMVAPFTGLKSSS 165
            +ASS+ISS  VAT  R ++ QA SM+APFTGLKS++
Sbjct:    1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAA 34          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 5.893e-39
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  186 KTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            + NNDITS+ASNGGR+QCM+VWPP G KK ET SYLPPL++E+L+KE+ YLL +GW+PC EF+   G+V REH ++P YYDGRYWT  K  ++G TD +  +  + E  + YP
Sbjct:   41 RKNNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 153          

HSP 2 Score: 36.5798 bits (83), Expect = 5.893e-39
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS++S+     A   + AQA+MVAPF GLKS S
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.000e-38
Identity = 69/113 (61.06%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  186 KTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            + +NDITSIASNGGR+QCM+VWPP G KK ET SYLPPL+D  LL ++ YLL  GWIPC EF+LE  +V RE+  SP Y DGRYWT  K  +YG TD A  LN V E  + YP
Sbjct:   43 RKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYP 155          

HSP 2 Score: 36.1946 bits (82), Expect = 1.000e-38
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   61 LASSMISS--TTVATANRASLAQASMVAPFTGLKS 159
            +ASSM+S+  T VA A  +  AQA+MVAPF GLKS
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.213e-38
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  186 KTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            K +NDITSIASNGGR+QCM+VWPP G KK ET SYLPPL++E+L+KE+ YLL +GW+PC EF+   G+V REH ++P YYDGRYWT  K  ++G TD +  +  + E  + YP
Sbjct:   38 KKSNDITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 150          

HSP 2 Score: 35.039 bits (79), Expect = 2.213e-38
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1
Query:   67 SSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +SM+S+  V    R + AQASMVAPFTGLKS S
Sbjct:    2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVS 32          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.213e-38
Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            ++K N DITSIASNGGR+QCM+VWPP   KK ET SYLP L++E LL+E+ YLL++GW+PC EF+ E G+V RE+  SP YYDGRYWT  K  ++G TDA   L  V E  + YP
Sbjct:   39 SRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYP 153          

HSP 2 Score: 36.965 bits (84), Expect = 2.213e-38
Identity = 17/31 (54.84%), Postives = 23/31 (74.19%), Query Frame = 1
Query:   73 MISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +I S+  A A   + AQASM+APFTGLKS++
Sbjct:    4 LIMSSAAAVATGTNAAQASMIAPFTGLKSAT 34          
The following BLAST results are available for this feature:
BLAST of EY702591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS1_AMAHP7.096e-4059.13Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_SPIOL9.250e-4054.24Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS4_MESCR1.205e-3957.52Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_TOBAC1.205e-3958.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_NICSY1.205e-3958.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU3.473e-3959.13Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_MESCR5.893e-3956.64Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_AMAHP1.000e-3861.06Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_MESCR2.213e-3857.52Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_NICSY2.213e-3858.26Ribulose bisphosphate carboxylase small chain S41,... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702591 ID=EY702591; Name=EY702591; organism=Citrus sinensis; type=EST; length=963bp
TAACCTCCAGTACCCGTCCCGGATTCCCTGCGCAACCCACCCCTCCGGGA
GCAAGTACCACTGGCTTCCTCAATGATCTCATCCACCACCGTTGCCACCG
CCAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGC
CTCAAGTCTTCTTCTGGTGGGGGGCGGGAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGACTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGCTCGAGACTCCCTCATACCTCCCGCCAC
TGGCCGATGAAGCTCTGCTCAAGGAAATCACCTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTCGGAATTCCAGTTGGAGAAAGGGTGGGTGGACCGCGA
GCACCCACACTCACCACGATACTACGATGGACGCTACTGGACAACGGCGA
AGCCTGCCCTGTATGGGCGCACAGATGCAGCCGCAGGCTTGAACGGGGTG
CGGGAGGGCCCGAGGGAATACCCCCCCCATTCCCCCGAACTAGCGGATTC
GACCACAACCCGCCCCGGGCCGCCGATCATTCTTCCTTGCCTGCAAGCCA
CCAGGCGCCAAGGGACCCCAATAAACTTGCGCATCCCCCCCCGGCCCCAG
CGGCCCGCCACGAGTAAGGGGACACCCCCCCAAAGACTCACTTCTAACCA
ATGGGGGGCCCCTATTCGCGGCTTAGTTCCGGGTTCCGCGCGGCGTGGGG
CCCGCTGCCCCAACCCTCTTCGGCTCTTTCACCCAACCTCACGCTTCATT
CCTTTCCACCTCAACATCTAAAAACTGCAATGGTTTGGCCCCACCCCCCT
CCTGGCCGCGGCCGGCGGCGGGGACCCCCCACCCGAGGGAGGATCCCGGG
GTAAATAGAACATCGGCTTGGGAACCACCCAAACACAAGAAGGGGCGGCC
CCCTTCAGGCGCC
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