EY702591

Overview
NameEY702591
Unique NameEY702591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.755e-38
Identity = 65/113 (57.52%), Postives = 85/113 (75.22%), Query Frame = 3
Query:  186 KTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            + NNDITS+ASNGGR+QCM VWPP G+KK ET SYLPPL++E+LLKE+ YLL +GW+PC EF+   G+V REH ++P YYDGRYWT  K  ++G TD +  +  + E  + YP
Sbjct:   41 RKNNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYP 152          

HSP 2 Score: 36.5798 bits (83), Expect = 3.755e-38
Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS++S+     A   + AQA+MVAPF GLKS S
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSIS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.756e-38
Identity = 69/113 (61.06%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  186 KTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            + +NDITSIASNGGR+QCM+VWPP G KK ET SYLPPL+D  LL ++ YLL +GWIPC EF+LE  +V RE+  SP Y DGRYWT  K  +YG TD A  LN V E  + YP
Sbjct:   40 RKSNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYP 152          

HSP 2 Score: 33.8834 bits (76), Expect = 3.756e-38
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKS 159
            +ASS++S+   A    AS AQA+MVAPF GLKS
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKS 32          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.083e-37
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK N D +++ SNGGR+QCMKVWPP G K+ ET SYLP L +  L KE+ YLLR+ W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+A  +  ++E  +EYP
Sbjct:   37 TKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 150          

HSP 2 Score: 41.5874 bits (96), Expect = 1.083e-37
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 1
Query:   82 STTVATANRASLAQASMVAPFTGLKSS 162
            S+TVAT +RA+ AQA+MVAPFTGLKS+
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSN 31          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.393e-37
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+K    ++++ SNGGR+QCMKVWP  GLKK ET SYLP L+ E+LLK+I YL+R+GW+PC EF LE G+V R++  SP YYDGRYWT  K  ++G TDAA  +    E  +EYP
Sbjct:   40 TQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYP 153          

HSP 2 Score: 43.1282 bits (100), Expect = 2.393e-37
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS    ++VATA RA+ AQASMVAPF GLKS+S
Sbjct:    1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSAS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 4.061e-37
Identity = 67/115 (58.26%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+K N D++ + SNGGR+QCMKVWP  G+KK ET SYLP + DEAL+K+I YLLRS WIPC EF   KG+V RE+  SP YYDGRYWT  K  ++G TDA      V E  +EYP
Sbjct:   39 TRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYP 152          

HSP 2 Score: 40.817 bits (94), Expect = 4.061e-37
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            ++S M+SS   AT  RAS AQ+SMVAPFTGLKS+S
Sbjct:    2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSAS 34          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.293e-37
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYPPH 530
            T+K NND++++ SNGGR+ CM+VWPP GLKK ET SYLPPL+ E L KE+ YLLR+ W+PC EF  E G+V RE+  SP YYDGRYWT  K  ++G TDA+  +  V E  + YP +
Sbjct:   38 TRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 37.3502 bits (85), Expect = 5.293e-37
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSS 162
            +ASSM++ST  A   RA  AQ+SMVAPF GL+SS
Sbjct:    1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSS 32          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.524e-36
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+KT   ++++ SNGGR+QCMKVWP  GLKK ET SYLP L+ E+LLK+I YL+R+GW+PC EF LE G+V R++  SP YYDGRYWT  K  ++G TDAA  +    E  +EYP
Sbjct:   40 TQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYP 153          

HSP 2 Score: 38.5058 bits (88), Expect = 1.524e-36
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS    ++VATA   + AQASMVAPF GLKS+S
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSAS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.586e-36
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+KT   ++++ SNGGR+QCMKVWP  GLKK ET SYLP L+ E+LLK+I YL+R+GW+PC EF LE G+V R++  SP YYDGRYWT  K  ++G T AA  +    E  +EYP
Sbjct:   40 TQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYP 153          

HSP 2 Score: 40.0466 bits (92), Expect = 2.586e-36
Identity = 22/35 (62.86%), Postives = 27/35 (77.14%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +ASS    ++VATA  A+ AQASMVAPF GLKS+S
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSAS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.388e-36
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T+K    ++++ SNGGR+QCMKVWP  GLKK ET SYLP L+ E+LLK+I YL+R+GW+PC EF LE G+V R++  SP YYDGRYWT  K  ++G TDAA  +    E  +EYP
Sbjct:   40 TQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYP 153          

HSP 2 Score: 38.891 bits (89), Expect = 4.388e-36
Identity = 23/34 (67.65%), Postives = 28/34 (82.35%), Query Frame = 1
Query:   64 ASSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +S+M+SS  VATA  A+ AQASMVAPF GLKS+S
Sbjct:    4 SSTMLSS--VATAACAAPAQASMVAPFVGLKSTS 35          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.390e-36
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYPPH 530
            T+K NND++++ SNGGR+ CM+VWPP GLKK ET SYLPPL+ E L KE+ YLLR+ W+PC EF  E G+V RE+  SP YYDGRYWT  K  ++G TDA+  +  V E  + YP +
Sbjct:   38 TRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 34.2686 bits (77), Expect = 4.390e-36
Identity = 19/34 (55.88%), Postives = 24/34 (70.59%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSS 162
            +ASSM++ST  A   R   AQ +MVAPF GL+SS
Sbjct:    1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSS 32          
The following BLAST results are available for this feature:
BLAST of EY702591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS5_MESCR3.755e-3857.52Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_AMAHP3.756e-3861.06Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR1.083e-3755.65Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_FRIAG2.393e-3755.65Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MUSAC4.061e-3758.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_LEMGI5.293e-3755.56Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS2_FRIAG1.524e-3656.52Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_FRIAG2.586e-3655.65Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FRIAG4.388e-3655.65Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS6_LEMGI4.390e-3655.56Ribulose bisphosphate carboxylase small chain SSU5... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702591 ID=EY702591; Name=EY702591; organism=Citrus sinensis; type=EST; length=963bp
TAACCTCCAGTACCCGTCCCGGATTCCCTGCGCAACCCACCCCTCCGGGA
GCAAGTACCACTGGCTTCCTCAATGATCTCATCCACCACCGTTGCCACCG
CCAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGC
CTCAAGTCTTCTTCTGGTGGGGGGCGGGAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGACTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGCTCGAGACTCCCTCATACCTCCCGCCAC
TGGCCGATGAAGCTCTGCTCAAGGAAATCACCTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTCGGAATTCCAGTTGGAGAAAGGGTGGGTGGACCGCGA
GCACCCACACTCACCACGATACTACGATGGACGCTACTGGACAACGGCGA
AGCCTGCCCTGTATGGGCGCACAGATGCAGCCGCAGGCTTGAACGGGGTG
CGGGAGGGCCCGAGGGAATACCCCCCCCATTCCCCCGAACTAGCGGATTC
GACCACAACCCGCCCCGGGCCGCCGATCATTCTTCCTTGCCTGCAAGCCA
CCAGGCGCCAAGGGACCCCAATAAACTTGCGCATCCCCCCCCGGCCCCAG
CGGCCCGCCACGAGTAAGGGGACACCCCCCCAAAGACTCACTTCTAACCA
ATGGGGGGCCCCTATTCGCGGCTTAGTTCCGGGTTCCGCGCGGCGTGGGG
CCCGCTGCCCCAACCCTCTTCGGCTCTTTCACCCAACCTCACGCTTCATT
CCTTTCCACCTCAACATCTAAAAACTGCAATGGTTTGGCCCCACCCCCCT
CCTGGCCGCGGCCGGCGGCGGGGACCCCCCACCCGAGGGAGGATCCCGGG
GTAAATAGAACATCGGCTTGGGAACCACCCAAACACAAGAAGGGGCGGCC
CCCTTCAGGCGCC
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