EY702591

Overview
NameEY702591
Unique NameEY702591
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length963
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.647e-35
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK N D +++ASNGGR+QCMKVWPP G K+ ET SYLP L +  L KE+ YLLR+ W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+A  +  ++E  +EYP
Sbjct:   32 TKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          

HSP 2 Score: 32.7278 bits (73), Expect = 1.647e-35
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  100 ANRASLAQASMVAPFTGLKSSS 165
            A  A++AQA+MVAPFTGLKS++
Sbjct:    6 ATVATVAQANMVAPFTGLKSNA 27          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.639e-35
Identity = 64/115 (55.65%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            ++K+N DITS+A+NGGR+ CM+VWPP  LKK ET SYLP L++E+LLKEI YLL  GW+PC EF++    V RE+  SP YYDGRYWT  K  ++G TDA+     V E    YP
Sbjct:   37 SRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYP 151          

HSP 2 Score: 36.1946 bits (82), Expect = 3.639e-35
Identity = 19/33 (57.58%), Postives = 27/33 (81.82%), Query Frame = 1
Query:   67 SSMISSTTVATANRASLAQASMVAPFTGLKSSS 165
            +S++S+  V TA+ A  AQA+MVAPF+GLKS+S
Sbjct:    2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTS 32          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.641e-35
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK N D +++ SNGGR+QCMKVWPP G K+ ET SYLP L +  L KE+ YLLR+ W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+A  +  ++E  +EYP
Sbjct:   32 TKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          

HSP 2 Score: 32.7278 bits (73), Expect = 3.641e-35
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  100 ANRASLAQASMVAPFTGLKSSS 165
            A  A++AQA+MVAPFTGLKS++
Sbjct:    6 ATVATVAQANMVAPFTGLKSNA 27          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.741e-35
Identity = 62/117 (52.99%), Postives = 83/117 (70.94%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYPPH 530
            T+K N +++++ SNGG++ CM+VWPP GLKK ET SYLPPL+ E L KE+ YLLR+ W+PC EF  E G+V RE+  SP YYDGRYWT  K  ++G TDA+  +  V E  + YP +
Sbjct:   38 TRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          

HSP 2 Score: 36.1946 bits (82), Expect = 4.741e-35
Identity = 20/34 (58.82%), Postives = 26/34 (76.47%), Query Frame = 1
Query:   61 LASSMISSTTVATANRASLAQASMVAPFTGLKSS 162
            +ASSM++ST  A   RA  AQ++MVAPF GL+SS
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSS 32          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.743e-35
Identity = 65/115 (56.52%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK N D +++ SNGGR+QCMKVWPP G KK ET SYLP L +  L KE+ YLLR+ W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+A  +  ++E  +EYP
Sbjct:   32 TKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          

HSP 2 Score: 31.5722 bits (70), Expect = 4.743e-35
Identity = 14/22 (63.64%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  100 ANRASLAQASMVAPFTGLKSSS 165
            A  A++AQA+MVAPFTGLK+++
Sbjct:    6 ATVATVAQANMVAPFTGLKANA 27          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.178e-35
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK N D +++ SNGGR+QCMKVWPP G K+ ET SYLP L +  L KE+ YLLR+ W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+A  +  ++E  +EYP
Sbjct:   32 TKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          

HSP 2 Score: 32.7278 bits (73), Expect = 6.178e-35
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  100 ANRASLAQASMVAPFTGLKSSS 165
            A  A++AQA+MVAPFTGLKS++
Sbjct:    6 ATVATVAQANMVAPFTGLKSNA 27          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.668e-34
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK N D +++ SNGGR+QCMKVWPP G KK  T SYLP L +  L KE+ YLLR+ W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+   +  ++E  +EYP
Sbjct:   32 TKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYP 145          

HSP 2 Score: 31.5722 bits (70), Expect = 6.668e-34
Identity = 14/22 (63.64%), Postives = 20/22 (90.91%), Query Frame = 1
Query:  100 ANRASLAQASMVAPFTGLKSSS 165
            A  A++AQA+MVAPFTGLK+++
Sbjct:    6 ATVAAVAQANMVAPFTGLKANA 27          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.181e-33
Identity = 66/115 (57.39%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            T K  ND +++ SNGGR+QCMKVWPP GLKK ET SYLPPL +  L KE+ YLLR  W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+A  +  + E  +EYP
Sbjct:   36 TTKKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYP 150          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.919e-33
Identity = 64/115 (55.65%), Postives = 82/115 (71.30%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            TKK N   +++ SNGGR+QCMKVWPP G KK ET SYLP L +  L KE+ YLLR+ W+PC EF+LE G+V RE+  SP YYDGRYWT  K  ++G TD+A  +  ++E  +EYP
Sbjct:   32 TKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYP 145          

HSP 2 Score: 28.1054 bits (61), Expect = 1.919e-33
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 1
Query:  100 ANRASLAQASMVAPFTGLKSSS 165
            A  A++ Q +MVAPFTGLK+++
Sbjct:    6 ATVAAVPQTNMVAPFTGLKANA 27          
BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.799e-32
Identity = 65/117 (55.56%), Postives = 84/117 (71.79%), Query Frame = 3
Query:  180 TKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQLEKGWVDREHPHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYPPH 530
            T+K NND++++ SNGGR+ CM+VWPP GLKK ET SYLPPL+ E L KE+ YLLR+ W+PC EF  E G+V RE+  SP YYDGRYWT  K  ++G TDA+  +  V E  + YP +
Sbjct:   38 TRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEY 153          
The following BLAST results are available for this feature:
BLAST of EY702591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS7_FLAPR1.647e-3556.52Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS_SILPR3.639e-3555.65Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FLAPR3.641e-3555.65Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_LEMGI4.741e-3552.99Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS1_FLAPR4.743e-3556.52Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_FLAPR6.178e-3555.65Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_FLAPR6.668e-3454.78Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_HELAN1.181e-3357.39Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR1.919e-3355.65Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_LEMGI3.799e-3255.56Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702591 ID=EY702591; Name=EY702591; organism=Citrus sinensis; type=EST; length=963bp
TAACCTCCAGTACCCGTCCCGGATTCCCTGCGCAACCCACCCCTCCGGGA
GCAAGTACCACTGGCTTCCTCAATGATCTCATCCACCACCGTTGCCACCG
CCAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGC
CTCAAGTCTTCTTCTGGTGGGGGGCGGGAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGACTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGCTCGAGACTCCCTCATACCTCCCGCCAC
TGGCCGATGAAGCTCTGCTCAAGGAAATCACCTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTCGGAATTCCAGTTGGAGAAAGGGTGGGTGGACCGCGA
GCACCCACACTCACCACGATACTACGATGGACGCTACTGGACAACGGCGA
AGCCTGCCCTGTATGGGCGCACAGATGCAGCCGCAGGCTTGAACGGGGTG
CGGGAGGGCCCGAGGGAATACCCCCCCCATTCCCCCGAACTAGCGGATTC
GACCACAACCCGCCCCGGGCCGCCGATCATTCTTCCTTGCCTGCAAGCCA
CCAGGCGCCAAGGGACCCCAATAAACTTGCGCATCCCCCCCCGGCCCCAG
CGGCCCGCCACGAGTAAGGGGACACCCCCCCAAAGACTCACTTCTAACCA
ATGGGGGGCCCCTATTCGCGGCTTAGTTCCGGGTTCCGCGCGGCGTGGGG
CCCGCTGCCCCAACCCTCTTCGGCTCTTTCACCCAACCTCACGCTTCATT
CCTTTCCACCTCAACATCTAAAAACTGCAATGGTTTGGCCCCACCCCCCT
CCTGGCCGCGGCCGGCGGCGGGGACCCCCCACCCGAGGGAGGATCCCGGG
GTAAATAGAACATCGGCTTGGGAACCACCCAAACACAAGAAGGGGCGGCC
CCCTTCAGGCGCC
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