EY702591 | Citrus Genome Database

Overview


Name	EY702591
Unique Name	EY702591
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	963

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD RYWT  K  ++G TDA+  L  + E  R YP
Sbjct:  135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYP 235

HSP 2 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD RYWT  K  ++G TDA+  L  + E  R YP
Sbjct:  279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYP 379

HSP 3 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD RYWT  K  ++G TDA+  L  + E  R YP
Sbjct:  566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYP 666

HSP 4 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD RYWT  K  ++G TDA+  L  + E  R YP
Sbjct:  709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYP 809

HSP 5 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD RYWT  K  ++G TDA+  L  + E  R YP
Sbjct:  854 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYP 954

HSP 6 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD RYWT  K  ++G TDA+  L  + E  R YP
Sbjct:  997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYP 1097

HSP 7 Score: 74.7146 bits (182), Expect = 8.800e-13
Identity = 40/101 (39.60%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD RYWT  K  ++G TDA+  L  + E  R YP
Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYP 1241

HSP 8 Score: 72.7886 bits (177), Expect = 3.344e-12
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREHP-----HSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            MKVW P   KK ET SYLPPL+D  + K++  ++  G  PC EF   E  ++  ++       +  YYD  YWT  K  ++G TDA+  L  + E  R YP
Sbjct:  422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYP 522

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.501e-12
Identity = 39/101 (38.61%), Postives = 54/101 (53.47%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEF-QLEKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            M VW P   K  ET SYLPPL+DE +  ++ Y++ +GWIPC EF + +K +V  E        S  YYD RYWT  K  ++G  D    L  +    + +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFP 146

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.501e-12
Identity = 39/101 (38.61%), Postives = 53/101 (52.48%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEF-QLEKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            M VW P   K  ET SYLPPL DE +  ++ Y++ +GWIPC EF + +K +V  E        S  YYD RYWT  K  ++G  D    L  +    + +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFP 146

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.960e-12
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            M VW P   K  ET SYLPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L+ ++   + +P
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 145

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.960e-12
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            M VW P   K  ET SYLPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L+ ++   + +P
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 143

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.960e-12
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 3

Query:  120 SGQHGRPLHRPQVFFWWGAGTKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            S +  +PL  P+V       T       T+IA+     + M VW P   K  ET S+LPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TDA+  L+ ++   + +P
Sbjct:   13 SKECAKPLASPKV-------TLNKRGFATTIATKN---RGMMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFP 143

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.560e-12
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            M VW P   K  ET SYLPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L+ ++   + +P
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFP 144

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.560e-12
Identity = 37/101 (36.63%), Postives = 54/101 (53.47%), Query Frame = 3

Query:  240 MKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            M VW P   K  ET SYLPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L  ++   + +P
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFP 143

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.344e-12
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 3

Query:  120 SGQHGRPLHRPQVFFWWGAGTKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            S +  +PL  P+V       T       T+IA+       M VW P   K  ET S+LPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L+ ++   + +P
Sbjct:    4 SKECAKPLATPKV-------TLNKRGFATTIATKNRE---MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 134

[Close]

BLAST of EY702591 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.344e-12
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 3

Query:  120 SGQHGRPLHRPQVFFWWGAGTKKTNNDITSIASNGGRLQCMKVWPPTGLKKLETPSYLPPLADEALLKEITYLLRSGWIPCSEFQL-EKGWVDREH-----PHSPRYYDGRYWTTAKPALYGRTDAAAGLNGVREGPREYP 524
            S +  +PL  P+V       T       T+IA+       M VW P   K  ET S+LPPL DE + K++ Y+L + W PC EF   ++ +   E+     P +  Y D RYWT  K  ++G TD +  L+ ++   + +P
Sbjct:   13 SKECAKPLATPKV-------TLNKRGFATTIATKNRE---MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFP 143

The following BLAST results are available for this feature:

BLAST of EY702591 vs. ExPASy Swiss-Prot

BLAST of EY702591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104


Match Name	E-value	Identity	Description
RBS_EUGGR	8.800e-13	39.60	Ribulose bisphosphate carboxylase small chains, ch...	[more]
RBS2_CHLRE	1.501e-12	38.61	Ribulose bisphosphate carboxylase small chain 2, c...	[more]
RBS1_CHLRE	1.501e-12	38.61	Ribulose bisphosphate carboxylase small chain 1, c...	[more]
RBS5_ACECL	1.960e-12	36.63	Ribulose bisphosphate carboxylase small chain 5, c...	[more]
RBS4_ACECL	1.960e-12	36.63	Ribulose bisphosphate carboxylase small chain 4, c...	[more]
RBS3_ACEAT	1.960e-12	32.62	Ribulose bisphosphate carboxylase small chain 3, c...	[more]
RBS7_ACECL	2.560e-12	36.63	Ribulose bisphosphate carboxylase small chain 7, c...	[more]
RBS6_ACECL	2.560e-12	36.63	Ribulose bisphosphate carboxylase small chain 6, c...	[more]
RBS2_ACEAT	3.344e-12	31.91	Ribulose bisphosphate carboxylase small chain 2, c...	[more]
RBS1_ACEAT	3.344e-12	31.91	Ribulose bisphosphate carboxylase small chain 1, c...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-009-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702591 ID=EY702591; Name=EY702591; organism=Citrus sinensis; type=EST; length=963bp
TAACCTCCAGTACCCGTCCCGGATTCCCTGCGCAACCCACCCCTCCGGGA
GCAAGTACCACTGGCTTCCTCAATGATCTCATCCACCACCGTTGCCACCG
CCAACCGCGCCAGCCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGC
CTCAAGTCTTCTTCTGGTGGGGGGCGGGAACCAAGAAGACCAACAATGAC
ATTACTTCCATTGCAAGCAACGGCGGAAGACTCCAATGCATGAAGGTGTG
GCCACCAACTGGCTTGAAGAAGCTCGAGACTCCCTCATACCTCCCGCCAC
TGGCCGATGAAGCTCTGCTCAAGGAAATCACCTACCTTCTCCGCTCCGGC
TGGATTCCCTGCTCGGAATTCCAGTTGGAGAAAGGGTGGGTGGACCGCGA
GCACCCACACTCACCACGATACTACGATGGACGCTACTGGACAACGGCGA
AGCCTGCCCTGTATGGGCGCACAGATGCAGCCGCAGGCTTGAACGGGGTG
CGGGAGGGCCCGAGGGAATACCCCCCCCATTCCCCCGAACTAGCGGATTC
GACCACAACCCGCCCCGGGCCGCCGATCATTCTTCCTTGCCTGCAAGCCA
CCAGGCGCCAAGGGACCCCAATAAACTTGCGCATCCCCCCCCGGCCCCAG
CGGCCCGCCACGAGTAAGGGGACACCCCCCCAAAGACTCACTTCTAACCA
ATGGGGGGCCCCTATTCGCGGCTTAGTTCCGGGTTCCGCGCGGCGTGGGG
CCCGCTGCCCCAACCCTCTTCGGCTCTTTCACCCAACCTCACGCTTCATT
CCTTTCCACCTCAACATCTAAAAACTGCAATGGTTTGGCCCCACCCCCCT
CCTGGCCGCGGCCGGCGGCGGGGACCCCCCACCCGAGGGAGGATCCCGGG
GTAAATAGAACATCGGCTTGGGAACCACCCAAACACAAGAAGGGGCGGCC
CCCTTCAGGCGCC