EY702588

Overview
NameEY702588
Unique NameEY702588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702588 vs. ExPASy Swiss-Prot
Match: MTND_DICDI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Dictyostelium discoideum GN=adi1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.648e-24
Identity = 57/137 (41.61%), Postives = 76/137 (55.47%), Query Frame = 1
Query:   37 EFVSLDQLSELGVLSWRLDADNYETXXXXXXXXXXXXYSYMDFCEGCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIPIWVNKGRMMG*PAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNR 447
            + +SLD L E  VL + +D +                Y   D  +   ++ P  E+K+K FFEEHLH DEEIR+ + G G+FD+RD+N+KW+ I   KG ++  PA  YHRF LD    I AMRLF   P W P NR
Sbjct:   11 DVISLDYLKEHNVLYFPMDREKENYKEPLETLCKERGYKNRDEVK-LSKETPGLEDKLKIFFEEHLHDDEEIRFILDGCGFFDIRDKNDKWVKIKEKKGDLIIVPANMYHRFALDESRNIHAMRLFTDAPKWVPINR 146          
BLAST of EY702588 vs. ExPASy Swiss-Prot
Match: MTND_SCHPO (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Schizosaccharomyces pombe GN=adi1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.294e-22
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  196 YEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIPIWVNKGRMMG*PAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNR---PHDHLPARKGYVQN 489
            Y+  +K FFEEHLH DEEIR  + G+GYFDVR  +++W+ I+V KG ++  P G YHRFT  TD+YI AMRLF  +P W   +R     + L ARK Y+ +
Sbjct:   71 YDNMVKKFFEEHLHEDEEIRLILDGNGYFDVRSVDDRWVRIFVEKGDLIILPPGIYHRFTTTTDDYIHAMRLFHENPKWIALSRTDSTSEELDARKSYLNS 171          
BLAST of EY702588 vs. ExPASy Swiss-Prot
Match: MTND_BACA2 (Acireductone dioxygenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=mtnD PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.887e-11
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  190 PNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIPIWVNKGRMMG*PAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 438
            PN +E +KNF  EH HTD+E+R+ V+G G F ++ ++  +  + +N G ++  P    H FTL  D  + A+R+FV    W P
Sbjct:   87 PNLDELLKNFQREHHHTDDEVRFIVSGHGIFVIQGKDGTFFDVRLNPGDLISVPENIRHYFTLQEDRRVVAIRIFVTTEGWVP 169          
BLAST of EY702588 vs. ExPASy Swiss-Prot
Match: MTND_EXIS2 (Acireductone dioxygenase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=mtnD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  190 PNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIPIWVNKGRMMG*PAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 438
            PN +E + NF +EH HTD+E+R+ V+G G F ++D    +  I +N G ++  P    H FTL  D  + A+R+FV    W P
Sbjct:   86 PNLDELLVNFQKEHHHTDDEVRFIVSGHGVFAIQDDEVGYYNIELNPGDLISVPVNTRHYFTLQEDRKVVAVRIFVTTDGWVP 168          
BLAST of EY702588 vs. ExPASy Swiss-Prot
Match: MTND_BACLD (Acireductone dioxygenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=mtnD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.204e-11
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  190 PNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIPIWVNKGRMMG*PAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 438
            P  +E +KNF +EH HTD+E+R+ V+G G F +  ++  +  + +N G ++  P    H FTL  D  + A+R+FV    W P
Sbjct:   87 PKLDELLKNFKQEHHHTDDEVRFIVSGHGIFAIEGKDGTFFDVLLNPGDLISVPENTRHYFTLQEDRKVVAVRIFVTTEGWVP 169          
BLAST of EY702588 vs. ExPASy Swiss-Prot
Match: MTND_BACCR (Acireductone dioxygenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mtnD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.171e-11
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  190 PNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIPIWVNKGRMMG*PAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 438
            PN +E + NF +EH HTD+E+R+ V+G G F +  ++ K+  + +  G ++  P    H FTL  D  + A+R+FV    W P
Sbjct:   86 PNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGKFFDVELEPGDLISVPENARHYFTLQDDRQVVAIRIFVTTEGWVP 168          
The following BLAST results are available for this feature:
BLAST of EY702588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MTND_DICDI9.648e-2441.611,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
MTND_SCHPO5.294e-2249.501,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
MTND_BACA21.887e-1137.35Acireductone dioxygenase OS=Bacillus amyloliquefac... [more]
MTND_EXIS24.204e-1138.55Acireductone dioxygenase OS=Exiguobacterium sibiri... [more]
MTND_BACLD4.204e-1136.14Acireductone dioxygenase OS=Bacillus licheniformis... [more]
MTND_BACCR7.171e-1136.14Acireductone dioxygenase OS=Bacillus cereus (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-009-G08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702588 ID=EY702588; Name=EY702588; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGGACTCCCCCATCCAAGGATCCAAAGGAATTTGTGTCCCT
GGACCAGCTTTCTGAACTTGGAGTACTCAGCTGGCGATTAGATGCTGATA
ACTATGAAACTGATGAGGAACTGAGGAGGAGGCGGGGAGATCGCGGATAT
TCTTACATGGACTTTTGCGAGGGTTGCCCAGAAAAACTGCCAAATTATGA
AGAGAAGATCAAAAACTTTTTCGAAGAACATCTTCATACAGATGAAGAGA
TCCGCTACTGTGTGGCAGGAAGTGGTTACTTTGATGTCAGGGACCGTAAT
GAAAAATGGATTCCCATATGGGTAAACAAAGGACGAATGATGGGGTGACC
TGCTGGATGTTACCATCGCTTTACTTTGGATACAGACAACTATATCAAGG
CTATGCGTCTGTTTGTAGGTGATCCCGTTTGGACTCCATTCAACCGTCCC
CATGATCATTTACCCGCAAGGAAGGGATATGTTCAAAATTTCTTGCAGAA
GGAAGCTGGTGACAGCCCTATCGATGCTGCTGCGTAATTTGCGCAATTCC
TTGCTCATTGGATCAATAGGACTGGCTTTAATAAATAAAGAAACTTCTGG
TTATATGGGTTGTCTGCGTCTCACGCTCCTGGAGGTACCCGCGGGGGTTA
AGTGCGTTGGTAACATCTCCTGTTGCCTGGGTGCCGCCCCTGCTGGAAAC
TCCCCACGAATATCCGGGGCCTTCCTTTCCGGGATTAAAAGGCCCCGCTA
TATTTTAACCTCTCCGCCCACTGGAACTCCATTCGCACATTCGTGCCTCC
CCCCACAAAAAACAAAAAAGCGCGGCCCCCCCTCAAGCCTCCCGCCTCCC
GGCGCGCGCCTTCGAACCCCCACCCC
back to top