DY305585

Overview
NameDY305585
Unique NameDY305585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1188
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLTV QF ++IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVY 115          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 3.954e-16
Identity = 39/78 (50.00%), Postives = 56/78 (71.79%), Query Frame = 1
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDE-DGFLYVTYSGENTF 903
            S+LPE E  +YLVP ++ V QF++++R R+ LS   A+F+FV+N LP T  +M ++Y+  KDE DGFLY+ YS E TF
Sbjct:   40 SNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTF 117          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.150e-15
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            + LP+ E  +YLVP D+TV  F++++ KR++L   KA+F+FV N LP T + M ++Y   K+EDGFLY+ YS E TF
Sbjct:   42 ADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTF 118          
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.347e-15
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            +P+ +  +YLVP+DLT  QF  +IRKRI L  E A+F FV+N +PPT A M  +Y++  +ED FLYV YS E+ +
Sbjct:   41 VPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVY 115          
The following BLAST results are available for this feature:
BLAST of DY305585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
GBRL1_XENTR3.954e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA3.954e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT3.954e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE3.954e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_HUMAN3.954e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO3.954e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN3.954e-1650.67Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8D_ORYSJ3.954e-1650.00Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
ATG8H_ARATH1.150e-1548.05Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
GBRL3_HUMAN3.347e-1549.33Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1CB11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305585 ID=DY305585; Name=DY305585; organism=Citrus sinensis; type=EST; length=1188bp
GATTAACACTTGAGCTGCATTATTTGAAACAATTCTTGGTAGCAATCTCA
TCAACTTTACGTAGCACTCTCATTCCTTTCTTTTCTAAGGTATATTGATC
TCATTCCTCTGTGGTAAGGGGCAGCCAGCAGAGTATGGCAACCTCTTACT
TGTGCTACTTTGTTTGTAATATTACCATAGTTTTCATTGTTATCTTATAT
TGTTCTTCCTGTTTCATTTAGCTGATCACATGGCTCTGTCATGTGAGTCT
GCATACATCCTATGACAGCTTCTTGCAGCTATTTTCTTTGTGGGTCTTGC
TAGCTTACAGTTTTTGTATATTACAGCCCATAAAGAAGGGGCGTTAACTG
GCCCTCATCCAGTTACCCCTTTTGGCCTGGCTGTACATTACAGTAAATGT
AAGGTAGCCATGTCTTTTTTCCATTTTTTTCCTTTATATTTGAGATTAAA
ACCTAAGACCTAATCAAAATTTAGTCATTCATTTGTTTACCTGATAATCA
TCATATCTATTACTTCTTTTTCTTTGTCGCATTTCTTTGAAAGATCATTG
TATTTGTAGAATTGGCTGTCGCTTCAGTGTTTATAGTTGCTATCATTGCT
GACAGATGGTAATTTAAATGTCCATATGGACTATAACAACTCGCTACTTG
ATTCTATCATACTAATAAGGTTTCCTCTTTACCTGAATGTGAAAATTACA
GGTATCTTGTTCCAGCTGACCTGACTGTANGACAATTTGTCTATGTCATC
CGTAAAAGGATCAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTGGA
TAATGTGCTCCCACCTACAGGTGCAATTATGTCTGCCATATACAAGGAAA
AAAAGGATGAAGATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACACA
TTTGAAACCACATCCCAGTTTACCCTTGGAATATTATTCGCCTCTTGTGT
GGGTTCCTGTGGCGACCACATTTTATCTTATTAACATCCTTGCTTTCCGC
CTATAATTCCTTTATCGGGCAAATTTATTATTTAAAAAAAAATGGCCCGT
AAAAAATGAACGGTTACTAATGTTAATAAATTCTAAAGGCAAAAAAATGA
CAAATTCTTTCTTCCCTTTCCTTTTTTAAAAAATTTTTTTTTCGGTTTGG
GGATTTTTTCGGGGGGGTTTCCATCCTGGAATATAATT
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