DY305585

Overview
NameDY305585
Unique NameDY305585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1188
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.661e-14
Identity = 37/77 (48.05%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            S L + +  +YLVP+DLTV QF ++IRKRI+L  E A+F FV+NV+P T   M  +Y++  +ED FLY+ YS E+ +
Sbjct:   39 SKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVY 115
[Close]
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 5.344e-13
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = 1 
Query:  673 SSLPECENYRYLVPADLTVXQFVYVIRKRIKLS---AEKAIFIFVD-NVLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            S +P+    ++L P+++ +  F+  IRK +  S    +KAIF+FV+ N LPP+  ++S+IY   KDEDGFLY+ YSGENTF
Sbjct:   42 SDVPDINKKKFLAPSNMVITNFIMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTF 122
[Close]
BLAST of DY305585 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.002e-11
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:  679 LPECENYRYLVPADLTVXQFVYVIRKRIKLSAEKAIFIFVDN-VLPPTGAIMSAIYKEKKDEDGFLYVTYSGENTF 903
            LP  +  ++LVP +LT+ QF+ +IR R+ L A +A ++ V+N  L    A M+ IY++ KDEDGF+Y+TY+ + TF
Sbjct:   50 LPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETF 125
The following BLAST results are available for this feature:
BLAST of DY305585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
LGG1_CAEEL1.661e-1448.05Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
ATG8L_DICDI5.344e-1345.68Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3C_HUMAN5.002e-1143.42Microtubule-associated proteins 1A/1B light chain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1CB11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305585 ID=DY305585; Name=DY305585; organism=Citrus sinensis; type=EST; length=1188bp
GATTAACACTTGAGCTGCATTATTTGAAACAATTCTTGGTAGCAATCTCA
TCAACTTTACGTAGCACTCTCATTCCTTTCTTTTCTAAGGTATATTGATC
TCATTCCTCTGTGGTAAGGGGCAGCCAGCAGAGTATGGCAACCTCTTACT
TGTGCTACTTTGTTTGTAATATTACCATAGTTTTCATTGTTATCTTATAT
TGTTCTTCCTGTTTCATTTAGCTGATCACATGGCTCTGTCATGTGAGTCT
GCATACATCCTATGACAGCTTCTTGCAGCTATTTTCTTTGTGGGTCTTGC
TAGCTTACAGTTTTTGTATATTACAGCCCATAAAGAAGGGGCGTTAACTG
GCCCTCATCCAGTTACCCCTTTTGGCCTGGCTGTACATTACAGTAAATGT
AAGGTAGCCATGTCTTTTTTCCATTTTTTTCCTTTATATTTGAGATTAAA
ACCTAAGACCTAATCAAAATTTAGTCATTCATTTGTTTACCTGATAATCA
TCATATCTATTACTTCTTTTTCTTTGTCGCATTTCTTTGAAAGATCATTG
TATTTGTAGAATTGGCTGTCGCTTCAGTGTTTATAGTTGCTATCATTGCT
GACAGATGGTAATTTAAATGTCCATATGGACTATAACAACTCGCTACTTG
ATTCTATCATACTAATAAGGTTTCCTCTTTACCTGAATGTGAAAATTACA
GGTATCTTGTTCCAGCTGACCTGACTGTANGACAATTTGTCTATGTCATC
CGTAAAAGGATCAAACTGAGTGCTGAAAAGGCGATATTTATTTTTGTGGA
TAATGTGCTCCCACCTACAGGTGCAATTATGTCTGCCATATACAAGGAAA
AAAAGGATGAAGATGGTTTTCTTTATGTGACTTACAGTGGGGAGAACACA
TTTGAAACCACATCCCAGTTTACCCTTGGAATATTATTCGCCTCTTGTGT
GGGTTCCTGTGGCGACCACATTTTATCTTATTAACATCCTTGCTTTCCGC
CTATAATTCCTTTATCGGGCAAATTTATTATTTAAAAAAAAATGGCCCGT
AAAAAATGAACGGTTACTAATGTTAATAAATTCTAAAGGCAAAAAAATGA
CAAATTCTTTCTTCCCTTTCCTTTTTTAAAAAATTTTTTTTTCGGTTTGG
GGATTTTTTCGGGGGGGTTTCCATCCTGGAATATAATT
back to top