DY305556

Overview
NameDY305556
Unique NameDY305556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1258
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305556 vs. ExPASy Swiss-Prot
Match: IMP2L_XENLA (Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis GN=immp2l PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.083e-11
Identity = 48/141 (34.04%), Postives = 67/141 (47.52%), Query Frame = 2 
Query:  155 VFGPSMLPTLNLTG----DVILAEYVSHRVGRVGPGDIVFVRSPVDPNKIVTKRIVGVEGDRVTYFKPRNGDTCHTVVFNRLCDVVFGIEMFG*VPKGHVWIQGDNLYASRDSRQFGPVPYGLIEGKAFFRVWPPNSFGSL 565
            V G SM P+LN       D++L      R   V  GDIV + SP +P + + KR++ +EGD V     +N                     +  VP+GHVW++GD+   S DS  FGPV  GL+   A   +WPPN +  L
Sbjct:   36 VEGVSMQPSLNPDARGESDIVLLNRWRARNYDVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTLGHKN--------------------RYVKVPRGHVWVEGDHHGHSFDSNAFGPVSLGLLHSHATHILWPPNRWQKL 156
The following BLAST results are available for this feature:
BLAST of DY305556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
IMP2L_XENLA1.083e-1134.04Mitochondrial inner membrane protease subunit 2 OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1BG03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305556 ID=DY305556; Name=DY305556; organism=Citrus sinensis; type=EST; length=1258bp
GCAGACACAGGAACAGACGCAGGGAAAGAAACGAGAGCGGGAGATGAGAA
GATGGGGACTGTTAGCAAAAGAAGCCCTAAGTCAAACACTAACGTTCGCC
AGATTCTTCTGTTTATTCCACGTCACCAACCACTACCTCTGGTCTCCTAC
CCTGGTGTTCGGTCCTAGCATGCTCCCGACCTTGAATCTAACCGGCGACG
TGATTCTTGCGGAATACGTGTCCCACAGAGTGGGAAGAGTGGGCCCTGGT
GATATCGTCTTCGTTCGTTCACCTGTCGACCCGAATAAGATTGTGACTAA
GCGCATTGTCGGCGTCGAAGGCGATAGAGTCACTTACTTCAAACCCAGGA
ATGGAGACACGTGTCACACTGTCGTGTTCAATCGTTTGTGTGATGTTGTC
TTTGGAATTGAAATGTTTGGTTAGGTCCCAAAGGGGCATGTTTGGATACA
AGGGGATAACCTTTATGCTTCCAGGGATTCGCGGCAATTTGGGCCTGTTC
CGTATGGTCTTATTGAAGGGAAAGCATTTTTCAGGGTGTGGCCACCTAAT
AGCTTTGGATCACTGGGATAATGAACGCTGCAATAGTTACTGATTGAAGT
TGTTTCCATACATTTGATTCGGTCTTCTTCAAAGTGGAGGAGAGCATTTT
CTTGATATAATAATTTATACAGGAATTCTTCAACCAATTGTCAGCTTCTC
TTTCTTCTGCTCTTGATATCCATCAGTTGTATACATTCAATTAAAATTGA
ACTCTTCTTAATGTTTTGGATTTGCAGGAATTGCTTTCATTTGAATTGAA
GAATGATTGCAAGTGTGTCAATTACATAAATACTCCTTAAATGGCGCCGT
GCTCCTTTTGTTCTTATACATCAACGGGAAATTTTTATTTTTTATTTTAT
TTTAGCTCTATTAATTTCTAACAGGAAATTGTCTTGGTTATTCATTAAAT
TTTCCCTCATTTTCAAAAATTTTACTTTTTTCGGTTTTGGTGAATTTAAA
AACCAATCAAAAAAAAAAAAAAAAATTTTAAATTTTCCCCTAAAAAAAAA
AAAAAAAAACCCGGGGGGGGGGGCCGGGGGAACCAATTCCCCCTTAATAG
TGGGCGTTATATAAAATTTTCGGGGGCCGGTTGTTTTTTTAAAACGCTTG
GGAGGGGGGGAAAAAAGGCGGGGGGGGTACCACAAAATTTAATCCCCCCG
CTTGCCCACTAAACTCCCCCCCCTTCTCTCCCTCCCCCCGGGGGGCTGTA
AATAACAA
back to top