DY305555

Overview
NameDY305555
Unique NameDY305555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1166
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305555 vs. ExPASy Swiss-Prot
Match: RBSK_ECO57 (Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.510e-12
Identity = 65/248 (26.21%), Postives = 108/248 (43.55%), Query Frame = 3
Query:  189 GGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALS----LWHPNLKLLLVTLGEHGCRYYTKSFRGAVDAFHVNTVNTTGAGDAFVVALLGKLVDDKSVLE 920
            GG  AN A+A  R G   AF+   GDD  G  +   L  + +    ++  +G  T +A + +  +GE     +   +A +     E   E I +A        +L+++      LE+   +  A A +++     + L P+P  ARE    +    ++I  ++ E E LTG    +DE A      L    ++ +L+TLG  G           V  F V  V+T  AGD F  AL+  L+++K + E
Sbjct:   41 GGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANAS-------ALLMQ------LESPLESVMAAAKIAHQNKTIVALNPAP--ARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPE 273          
BLAST of DY305555 vs. ExPASy Swiss-Prot
Match: RBSK_HUMAN (Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.972e-12
Identity = 70/240 (29.17%), Postives = 112/240 (46.67%), Query Frame = 3
Query:  189 GGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELN--LELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLT----GSDKIDDESALSLWHPNLKLLLVTLGEHGC--RYYTKSFRGAVDAFHVNTVNTTGAGDAFVVAL 884
            GG  AN  +  ARLG   + V K+G D FG+     LK+N +S +     + A T  A + +  +G+   +      A++LL  ++L     +I  AKV       L + P  S  LEA+  A+ +G    ++P       P+  +   Q  ++   ++V   ++ E E LT    GS     E+AL L     +++++TLG  GC     T+     +    V  V+TTGAGD+FV AL
Sbjct:   52 GGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEGQNIIVIV--AGANLLLNTEDLRAAANVISRAKVM---VCQLEITPATS--LEALTMARRSGVKTLFNPA------PAIADLDPQFYTL---SDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTEPEPKHIPTEKVKAVDTTGAGDSFVGAL 275          
BLAST of DY305555 vs. ExPASy Swiss-Prot
Match: RBSK_BACHD (Ribokinase OS=Bacillus halodurans GN=rbsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.393e-12
Identity = 73/274 (26.64%), Postives = 114/274 (41.61%), Query Frame = 3
Query:  120 LIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPD---ELNLELIRSAKV-----FHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPEEAREQIMSIWDKAEVIKVSDVELEFLTGSDKIDDESALSLWHPNLKLLLVTLGEHGCRYYTKSFRGAVDAFHVNTVNTTGAGD----AFVVALLGKLVDD 905
            + D VP      L +   F   PGG  AN A+A ARLG     +G++GDD FGH+L   L + G+  D +       + +A + L    +R+        A+  + PD       EL  S  V         +++ ++E C   H+  +                      +P  A++   + W  A  I  ++ E   L G     DE   +L     + L++T G  G ++Y    +  V++F V  V+TTGAGD    AF VAL G  V +
Sbjct:   19 ITDVVPVQGETVLGK--DFRTVPGGKGANQAVAAARLGANVRMIGRVGDDPFGHVLTENLAKEGIITDSVKPVTDCTSGVATILL---SDRDNRIIVTKGANEHVTPDYVAAFEQELAASDVVLLQLEIPLETVAYVLEFCAKHHVTTVL---------------------NPAPAQKLPDAAWTDATYISPNENECLQLFG-----DEPDANL----RQKLIMTKGADGVQFYENDEQVQVESFRVEPVDTTGAGDTFNGAFAVALGGGTVKE 257          
The following BLAST results are available for this feature:
BLAST of DY305555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RBSK_ECO571.510e-1226.21Ribokinase OS=Escherichia coli O157:H7 GN=rbsK PE=... [more]
RBSK_HUMAN1.972e-1229.17Ribokinase OS=Homo sapiens GN=RBKS PE=1 SV=1[more]
RBSK_BACHD4.393e-1226.64Ribokinase OS=Bacillus halodurans GN=rbsK PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BF11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305555 ID=DY305555; Name=DY305555; organism=Citrus sinensis; type=EST; length=1166bp
TTATTTCTCTTCATAGACTCTCTCTCCATTCAATACACATCGTTTCGATT
TTTGTACAAATGGCTACCAACGGCGCCGTTTCATCCTCCTCAAGCCTGAT
CGTGTCCTTCGGTGAGATGCTCATCGACTTCGTCCCGACGGTCTCCGGCG
TCTCCCTCGCCGAGGCCCCCGGATTCCTCAAGGCCCCCGGCGGCGCCCCC
GCCAACGTCGCCATAGCCGTAGCTCGCCTCGGCGGCAAGGCAGCCTTCGT
CGGCAAGCTCGGCGACGACGAGTTCGGTCACATGCTCGCTGGGATCTTGA
AGGAGAACGGAGTCAGCGCTGACGGCATCAACTTTGACCAGGGTGCCAGA
ACTGCCCTTGCATTCGTGACCCTGCGGGCTGACGGCGAGCGCGAGTTCAT
GTTTTACAGAAACCCCAGCGCTGATATGCTCTTGAGACCCGACGAGCTTA
ATCTTGAGCTGATCAGATCTGCCAAAGTTTTCCACTATGGGTCAATAAGC
CTGATAGTGGAGCCATGCCGATCAGCGCACTTGGAGGCAATGAAAGCAGC
CAAGGAAGCAGGAGCCCTTCTCTCATACGACCCCAACCTCCGGCTACCGT
TGTGGCCCTCGCCGGAGGAGGCGCGCGAGCAGATAATGAGCATCTGGGAC
AAGGCCGAGGTAATCAAAGTCAGTGATGTGGAGCTTGAATTCCTCACCGG
GAGTGACAAGATTGATGATGAATCAGCATTGTCGCTTTGGCATCCCAACT
TGAAACTCCTTTTGGTCACCCTTGGTGAGCATGGCTGCAGATACTACACC
AAGAGTTTCAGAGGAGCAGTGGATGCTTTTCATGTGAACACAGTAAATAC
AACCGGCGCTGGTGATGCATTTGTTGTTGCTCTTTTAGGGAAACTTGTTG
ATGACAAATCTGTTCTTGAGGATGAACCAAGGTTGCGGGAAAAATTGAAT
TTGCAAAGCCCTGTGAAGCATCACTACCACAAAAAAGGAACAATTTCCAC
TCTACCCACAAAATTCGAAACTCCTCACTTTCCTCAAGGAACGAAAAAAA
AAAAAAAATAATAAATTCCAAATTTTTTTTTTTTTTTTTTTTTAAATTTG
AAATTTTCCTTTTTTTTTGTAATTTTTAAAATTTTCTTTTTTTTTTTTCA
CAGGAAAGTTTTTCTT
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