DY305549

Overview
NameDY305549
Unique NameDY305549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1296
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 189.504 bits (480), Expect = 3.318e-47
Identity = 92/163 (56.44%), Postives = 119/163 (73.01%), Query Frame = 2 
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LWK CAGPL D+PK GE VYYFPQG++E ++AST +ELN+  P+  LPSK+ CRV+ IHL  E  +DE YA+ITL+P+ +Q    T      +  RP V+SF+KVLTASDTS +GGF V +KHA ECLPPL +    P QEL+AKDLHG +WRF+H +R
Sbjct:   24 MYEQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVIAIHLKVENNSDETYAEITLMPDTTQVVIPTQS---ENQFRPLVNSFTKVLTASDTSAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYR 179

HSP 2 Score: 21.557 bits (44), Expect = 3.318e-47
Identity = 7/10 (70.00%), Postives = 8/10 (80.00%), Query Frame = 3 
Query:  807 PKRHLLTPGW 836
            P+RH LT GW
Sbjct:  182 PQRHSLTTGW 191
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.306e-47
Identity = 91/166 (54.82%), Postives = 114/166 (68.67%), Query Frame = 2 
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQN--EPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            L  ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+E+  +IP +  LP +++C++ N+ + A+ ETDEVYAQ+TL P   Q   +P  P      S +P  + F K LTASDTSTHGGFSV R+ A +  PPLD  Q  P QEL+AKDLHG EW+F+HIFR
Sbjct:   27 LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFR 191

HSP 2 Score: 33.113 bits (74), Expect = 4.306e-47
Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGN 932
            PKRHLLT GW  V V  KRL AG +  F   ++N+   G +R N
Sbjct:  194 PKRHLLTTGWS-VFVSAKRLVAGDSVLFIWNDSNQLLLGIRRAN 236
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.306e-47
Identity = 91/166 (54.82%), Postives = 114/166 (68.67%), Query Frame = 2 
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQN--EPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            L  ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+E+  +IP +  LP +++C++ N+ + A+ ETDEVYAQ+TL P   Q   +P  P      S +P  + F K LTASDTSTHGGFSV R+ A +  PPLD  Q  P QEL+AKDLHG EW+F+HIFR
Sbjct:   27 LNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEMESQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQELKDPFLPAELGTASKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELMAKDLHGNEWKFRHIFR 191

HSP 2 Score: 33.113 bits (74), Expect = 4.306e-47
Identity = 21/44 (47.73%), Postives = 26/44 (59.09%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGN 932
            PKRHLLT GW  V V  KRL AG +  F   ++N+   G +R N
Sbjct:  194 PKRHLLTTGWS-VFVSAKRLVAGDSVLFIWNDSNQLLLGIRRAN 236
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 9.533e-47
Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 2 
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLP--EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            L  ELW ACAGPLV +P    RV YFPQGH EQ+ ASTN+E++ +IP +  LP +++C++ N+ + A+ ETDEVYAQ+TL P     Q EP  P    A S +P  + F K LTASDTSTHGGFSV R+ A +  PPLD +Q  P QEL+A+DLH  EW+F+HIFR
Sbjct:   25 LNSELWHACAGPLVSLPVVRSRVVYFPQGHSEQVAASTNKEVDAQIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPEEQKEPFLPMELGAASKQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDNEWKFRHIFR 189

HSP 2 Score: 35.039 bits (79), Expect = 9.533e-47
Identity = 22/44 (50.00%), Postives = 26/44 (59.09%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGN 932
            PKRHLLT GW  V V  KRL AG +  F   +NN+   G +R N
Sbjct:  192 PKRHLLTTGWS-VFVSAKRLVAGDSVIFIWNDNNQLLLGIRRAN 234
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 5.062e-45
Identity = 88/166 (53.01%), Postives = 113/166 (68.07%), Query Frame = 2 
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLP--EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            L  ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+E++  IP +  L  +++C++ N+ + A+ ETDEVYAQ+TL P     Q +P  P      S +P  + F K LTASDTSTHGGFSV R+ A +  PPLD +Q  P QEL+A+DLH  EW+F+HIFR
Sbjct:   22 LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQLHNVTMHADVETDEVYAQMTLQPLNAQEQKDPYLPAELGVPSRQP-TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFR 186

HSP 2 Score: 33.8834 bits (76), Expect = 5.062e-45
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRL AG +   + N+K
Sbjct:  189 PKRHLLTTGWS-VFVSAKRLVAGDSVLFIWNDK 220
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 5.069e-45
Identity = 85/165 (51.52%), Postives = 111/165 (67.27%), Query Frame = 2 
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHS-FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            L  ELW ACAGPLV +P  G RV YFPQGH EQ+ A+TN+E++  IP +  LP +++C++ N+ + A+ ETDEVYAQ+TL P   + +  T  P     P  +  + F K LTASDTSTHGGFSV R+ A +  PPLD     P QEL+A+DLH  EW+F+HIFR
Sbjct:   19 LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPEEQKETFVPIELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFR 183

HSP 2 Score: 34.6538 bits (78), Expect = 5.069e-45
Identity = 18/33 (54.55%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRL AG +   + N K
Sbjct:  186 PKRHLLTTGWS-VFVSAKRLVAGDSVIFIRNEK 217
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.606e-45
Identity = 88/173 (50.87%), Postives = 113/173 (65.32%), Query Frame = 2 
Query:  215 PSSNSDDLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLP--EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            P      L  ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+E+   IP +  LP++++C++ ++ + A+ ETDEVYAQ+TL P     QN+   P      S +P  + F K LTASDTSTHGGFSV R+ A    PPLD  Q  P QEL+A+D+H  EW+F+HIFR
Sbjct:   21 PEEEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFR 192

HSP 2 Score: 33.4982 bits (75), Expect = 6.606e-45
Identity = 18/33 (54.55%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRL AG +   + N K
Sbjct:  195 PKRHLLTTGWS-VFVSAKRLVAGDSVLFIWNEK 226
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.606e-45
Identity = 88/173 (50.87%), Postives = 113/173 (65.32%), Query Frame = 2 
Query:  215 PSSNSDDLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLP--EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            P      L  ELW ACAGPLV +P  G RV YFPQGH EQ+ ASTN+E+   IP +  LP++++C++ ++ + A+ ETDEVYAQ+TL P     QN+   P      S +P  + F K LTASDTSTHGGFSV R+ A    PPLD  Q  P QEL+A+D+H  EW+F+HIFR
Sbjct:   21 PEEEKKCLNSELWHACAGPLVCLPTVGTRVVYFPQGHSEQVAASTNKEVEGHIPNYPNLPAQLICQLHDVTMHADVETDEVYAQMTLQPLNPQEQNDAYLPAEMGIMSKQP-TNYFCKTLTASDTSTHGGFSVPRRAAERVFPPLDFTQQPPAQELIARDIHDIEWKFRHIFR 192

HSP 2 Score: 33.4982 bits (75), Expect = 6.606e-45
Identity = 18/33 (54.55%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRL AG +   + N K
Sbjct:  195 PKRHLLTTGWS-VFVSAKRLVAGDSVLFIWNEK 226
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 2.249e-44
Identity = 87/163 (53.37%), Postives = 113/163 (69.33%), Query Frame = 2 
Query:  236 LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +Y +LW  CAGPL  +PK GE+VYYFPQGH+E +E ST  EL+   P+F LPSK+ CRVV I    ++ TDEVYAQI+L+P+ ++           D+ RP V+ FSK+LTASD S  GG  + +++A EC PPLDM+Q   TQ LVAKDL+G EW FKH+FR
Sbjct:   22 MYEKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAIDRKVDKNTDEVYAQISLMPDTTE---VMTHNTTMDTRRPIVYFFSKILTASDVSLSGGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFR 181
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.011e-42
Identity = 86/180 (47.78%), Postives = 114/180 (63.33%), Query Frame = 2 
Query:  218 SSNSDDLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-----------EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            + ++  +Y ELW ACAGPL  +PK+G  V YFPQGH+EQ +A  +      IP F L  +I+CRVVN+ L+A ++TDEVY Q+TLLP           +  +      +   + S +   H F K LTASDTSTHGGFSV R+ A +C  PLD  Q  P+QEL+AKDLHG EW+F+HI+R
Sbjct:   56 TGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKFDLNPQIVCRVVNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYR 234

HSP 2 Score: 26.9498 bits (58), Expect = 1.011e-42
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW  + V  K L +G
Sbjct:  237 PRRHLLTTGWS-IFVSQKNLVSG 258
The following BLAST results are available for this feature:
BLAST of DY305549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ARFT_ARATH3.318e-4756.44Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFF_ORYSJ4.306e-4754.82Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI4.306e-4754.82Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFY_ORYSJ9.533e-4754.22Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFF_ARATH5.062e-4553.01Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFH_ARATH5.069e-4551.52Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFL_ORYSJ6.606e-4550.87Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI6.606e-4550.87Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFM_ARATH2.249e-4453.37Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFD_ARATH1.011e-4247.78Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BF02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305549 ID=DY305549; Name=DY305549; organism=Citrus sinensis; type=EST; length=1296bp
GGGCGTTTTCGTGGATTCTCCATAAGTTTTTAGAAAGAGAAGGGAGGCGG
TTTTGCTGGAGCTTTGCAACTAGAAGGCGGTTTTGTAACGGCTTTTAGTG
GTTTTCAGTTACAGTTTTGAGATCTCGCGATCGTTACGGATTGAAGAGAG
AGTTCGTGTCAGGACTCAAGTGCTTGTTCAGGAATCGAGAAAGTCTTTGA
GAGTTTATAAAATTCCGAGTAGTAATTCAGACGACTTGTACAGAGAGCTA
TGGAAGGCTTGTGCTGGTCCACTAGTCGACGTGCCGAAGCAAGGAGAGAG
GGTCTATTATTTTCCTCAAGGCCATATGGAACAATTAGAGGCATCTACGA
ATCAAGAACTGAATCAGAGGATTCCGTTGTTTCGTCTTCCGTCGAAGATT
CTATGTCGTGTTGTTAACATTCATCTCATGGCAGAACAAGAAACTGATGA
GGTTTATGCCCAGATTACTTTGCTGCCAGAACCAAGTCAAAATGAGCCTA
CAACTCCTGATCCATGCCCTGCTGATTCTCCAAGACCAAAAGTTCACTCA
TTCTCTAAGGTTTTAACTGCCTCTGATACAAGCACCCATGGAGGGTTTTC
TGTTCTTCGAAAGCATGCTACTGAATGCCTTCCTCCTCTGGACATGAATC
AGTCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGATATGAG
TGGCGATTTAAGCATATTTTCAGAGATTTTTAGAGTCAAACAAATTCATG
TAGGATCAAACCCCACTCAGTTTCCACCTAATCTATAATTGAATGAACAG
GTCAACCCCAAGAGGCACCTGCTTACACCAGGGTGGAAGTACGTTTTGGT
CCTTCCAAAGAGATTATTTGCTGGGGGAAACTTTTGTGGTCTTGAAAACA
ATAAATAACCCAGGGGCGAAAAACGGGGAAATACTTGGGGGGAATAAGGG
GTCTTTGGCTCATCACAAAAACCACCCTTGTTAAGGCCTTGGNCTTTTCT
NTTCCCAACCTTTGCCCCCTTNNGTTCTTTCCCCCCTTCTTTCTCCTGCT
TTTTTCTCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTCTTTCTTCCTTTCTCTTTTTTTTTCTTTTTTTCTCCCTTCCCTC
CTTTCTTTCTTTTCGCCCTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
TTTTTTNTNCTCTCTCCCNCCCCCTCTTTCCCCTCTCCTCCGGTTNCGCT
CGGGCCGCGCGGCGCTGCCCTCTCGTCTTTCTGGGCCGCTCGTGTG
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