DY305549

Overview
NameDY305549
Unique NameDY305549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1296
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.312e-42
Identity = 86/174 (49.43%), Postives = 108/174 (62.07%), Query Frame = 2 
Query:  209 KIPSSNSDDLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQN-EPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            K P+ NS     ELW ACAGPLV +P  G  V YFPQGH EQ+ AS  ++++  +P +  LPSK++C + N+ L A+ ETDEVYAQ+TL P  S   E            RP+   F K LTASDTSTHGGFSV R+ A +  PPLD +   P QEL A+DLH   W F+HI+R
Sbjct:   43 KAPAINS-----ELWHACAGPLVSLPPAGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHNVTLHADPETDEVYAQMTLQPVTSYGKEALQLSELALKQARPQTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDLHDNVWTFRHIYR 211

HSP 2 Score: 33.4982 bits (75), Expect = 1.312e-42
Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  + V  KRLFAG +   + + K
Sbjct:  214 PKRHLLTTGWS-LFVSGKRLFAGDSVIFVRDEK 245
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.340e-41
Identity = 79/161 (49.07%), Postives = 101/161 (62.73%), Query Frame = 2 
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGPLV +P  G  V YFPQGH EQ+ AS ++EL+       LPSK++C+++++ L A+ ETDEVYAQ+TL P      +            +     F K LTASDTSTHGGFSV R+ A +  PPLD     P QEL+AKDLH   W+F+HI+R
Sbjct:   24 ELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIPGYPSLPSKLICKLLSLTLHADSETDEVYAQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYR 184

HSP 2 Score: 33.113 bits (74), Expect = 5.340e-41
Identity = 17/33 (51.52%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRL AG +   + + K
Sbjct:  187 PKRHLLTTGWS-VFVSTKRLLAGDSVLFIRDEK 218
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.965e-41
Identity = 85/163 (52.15%), Postives = 109/163 (66.87%), Query Frame = 2 
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPK--VHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGPLV +P++G  VYYFPQGH EQ+ A+T +  N RIP +  LPS++LC+V NI L A+++TDEVYAQ+TL P  S+ +   P P      + K     F K LTASDTSTHGGFSV R+ A +  P LD +   P QEL+ +DLH   W F+HI+R
Sbjct:   39 ELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETD-VFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYR 200

HSP 2 Score: 30.0314 bits (66), Expect = 6.965e-41
Identity = 16/33 (48.48%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  + V  KRL AG +   + + K
Sbjct:  203 PKRHLLTTGWS-LFVGAKRLKAGDSVLFIRDEK 234
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.965e-41
Identity = 85/163 (52.15%), Postives = 109/163 (66.87%), Query Frame = 2 
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPK--VHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGPLV +P++G  VYYFPQGH EQ+ A+T +  N RIP +  LPS++LC+V NI L A+++TDEVYAQ+TL P  S+ +   P P      + K     F K LTASDTSTHGGFSV R+ A +  P LD +   P QEL+ +DLH   W F+HI+R
Sbjct:   39 ELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETD-VFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYR 200

HSP 2 Score: 30.0314 bits (66), Expect = 6.965e-41
Identity = 16/33 (48.48%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  + V  KRL AG +   + + K
Sbjct:  203 PKRHLLTTGWS-LFVGAKRLKAGDSVLFIRDEK 234
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 9.058e-41
Identity = 78/162 (48.15%), Postives = 104/162 (64.20%), Query Frame = 2 
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQN-EPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGPLV +P  G  V YFPQGH EQ+ AS  ++++  +P +  LPSK++C +  ++L A+ +TDEVYAQ+TL P  +   E            RP++  F K LTASDTSTHGGFSV R+ A +  PPLD +   P QEL A+D+H   W F+HI+R
Sbjct:   44 ELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKDVDAHVPSYPNLPSKLICLLHGVNLHADPDTDEVYAQMTLQPVNTYGKEALQISELALKQARPQMEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELQARDIHDNVWTFRHIYR 205

HSP 2 Score: 33.4982 bits (75), Expect = 9.058e-41
Identity = 17/33 (51.52%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  + V  KRLFAG +   + + K
Sbjct:  208 PKRHLLTTGWS-LFVSGKRLFAGDSVIVVRDEK 239
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.539e-40
Identity = 78/161 (48.45%), Postives = 100/161 (62.11%), Query Frame = 2 
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGPLV +P  G  V YFPQGH EQ+ AS ++EL+       LPSK++C+++++ L A+ ETDEVY Q+TL P      +            +     F K LTASDTSTHGGFSV R+ A +  PPLD     P QEL+AKDLH   W+F+HI+R
Sbjct:   24 ELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIPGYPSLPSKLICKLLSLTLHADSETDEVYVQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYR 184

HSP 2 Score: 33.113 bits (74), Expect = 1.539e-40
Identity = 17/33 (51.52%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRL AG +   + + K
Sbjct:  187 PKRHLLTTGWS-VFVSTKRLLAGDSVLFIRDEK 218
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.433e-40
Identity = 85/176 (48.30%), Postives = 106/176 (60.23%), Query Frame = 2 
Query:  212 IPSSNSDD---LYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +PSSN  +   +  +LW ACAGPLV +P  G  V YFPQGH EQ+ AS  Q+    IP +  LPSK++C + ++ L A+ ETDEVYAQ+TL P      E            R     F K LTASDTSTHGGFSV R+ A +  PPLD +   P QE+VAKDLH   W F+HI+R
Sbjct:    9 LPSSNEGEKKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM-QKQTDFIPNYPNLPSKLICLLHSVTLHADTETDEVYAQMTLQPVNKYDREALLASDMGLKLNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYR 183

HSP 2 Score: 35.039 bits (79), Expect = 4.433e-40
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRLFAG +   + + K
Sbjct:  186 PKRHLLTTGWS-VFVSTKRLFAGDSVLFVRDEK 217
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 5.812e-40
Identity = 88/199 (44.22%), Postives = 117/199 (58.79%), Query Frame = 2 
Query:  176 VQESRKSLRVYKIPSSNS--DDLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPC--------------PADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            V  +  S     + SSNS    +  ELW ACAGPL+ +PK+G  V YFPQGH+EQ    +         ++ LP  + CR++++ L AE  TDEVYAQ++LLPE    E    +                 +++P    H F K LTASDTSTHGGFSV R+ A +C PPLD +Q  P+QEL+A+DLHG EWRF+HI+R
Sbjct:   29 VSPTSSSSASVSVVSSNSAGGGVCLELWHACAGPLISLPKRGSLVLYFPQGHLEQAPDFS-------AAIYGLPPHVFCRILDVKLHAETTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTP----HMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYR 216

HSP 2 Score: 26.1794 bits (56), Expect = 5.812e-40
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L +G
Sbjct:  219 PRRHLLTTGWS-AFVNKKKLVSG 240
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 1.667e-39
Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = 2 
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEP-TTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGPLV +P+ G  VYYF QGH EQ+  ST +    ++P +  LPS+++C+V N+ L A++++DE+YAQ++L P  S+ +    PD       +     F K LTASDTSTHGGFSV R+ A +  PPLD +   PTQELV +DLH   W F+HI+R
Sbjct:   54 ELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQVHNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLRGSKHPTEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYR 215

HSP 2 Score: 30.0314 bits (66), Expect = 1.667e-39
Identity = 16/33 (48.48%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  + V  KRL AG +   + + K
Sbjct:  218 PKRHLLTTGWS-LFVGSKRLRAGDSVLFIRDEK 249
[Close]
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 3.679e-39
Identity = 77/166 (46.39%), Postives = 104/166 (62.65%), Query Frame = 2 
Query:  242 RELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPS----QNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +ELW ACAGPLV +P QG  + YFPQGH EQ+ AS  ++ + +IP +  LPSK++C + ++ ++A+ +TDEVYA++TL P  +      E            RP+   F K LTASDTSTHGGFSV R+ A    P LD +   P QEL A+DLH   W F+HI+R
Sbjct:   24 QELWYACAGPLVSLPPQGSLIVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHSVTMLADPDTDEVYARMTLQPVSNVTQCDKETLLASELALKQTRPQTEFFCKTLTASDTSTHGGFSVPRRAAERIFPRLDFSMQPPAQELQARDLHDNVWTFRHIYR 189

HSP 2 Score: 30.8018 bits (68), Expect = 3.679e-39
Identity = 16/33 (48.48%), Postives = 20/33 (60.61%), Query Frame = 3 
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  + V  KRL AG +   + + K
Sbjct:  192 PKRHLLTTGWS-LFVSGKRLLAGDSVLFIRDAK 223
The following BLAST results are available for this feature:
BLAST of DY305549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ARFS_ORYSJ1.312e-4249.43Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSJ5.340e-4149.07Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSJ6.965e-4152.15Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI6.965e-4152.15Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ORYSJ9.058e-4148.15Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFP_ORYSI1.539e-4048.45Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFS_ARATH4.433e-4048.30Auxin response factor 19 OS=Arabidopsis thaliana G... [more]
ARFC_ARATH5.812e-4044.22Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
ARFE_ARATH1.667e-3948.15Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFU_ORYSJ3.679e-3946.39Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BF02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305549 ID=DY305549; Name=DY305549; organism=Citrus sinensis; type=EST; length=1296bp
GGGCGTTTTCGTGGATTCTCCATAAGTTTTTAGAAAGAGAAGGGAGGCGG
TTTTGCTGGAGCTTTGCAACTAGAAGGCGGTTTTGTAACGGCTTTTAGTG
GTTTTCAGTTACAGTTTTGAGATCTCGCGATCGTTACGGATTGAAGAGAG
AGTTCGTGTCAGGACTCAAGTGCTTGTTCAGGAATCGAGAAAGTCTTTGA
GAGTTTATAAAATTCCGAGTAGTAATTCAGACGACTTGTACAGAGAGCTA
TGGAAGGCTTGTGCTGGTCCACTAGTCGACGTGCCGAAGCAAGGAGAGAG
GGTCTATTATTTTCCTCAAGGCCATATGGAACAATTAGAGGCATCTACGA
ATCAAGAACTGAATCAGAGGATTCCGTTGTTTCGTCTTCCGTCGAAGATT
CTATGTCGTGTTGTTAACATTCATCTCATGGCAGAACAAGAAACTGATGA
GGTTTATGCCCAGATTACTTTGCTGCCAGAACCAAGTCAAAATGAGCCTA
CAACTCCTGATCCATGCCCTGCTGATTCTCCAAGACCAAAAGTTCACTCA
TTCTCTAAGGTTTTAACTGCCTCTGATACAAGCACCCATGGAGGGTTTTC
TGTTCTTCGAAAGCATGCTACTGAATGCCTTCCTCCTCTGGACATGAATC
AGTCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGATATGAG
TGGCGATTTAAGCATATTTTCAGAGATTTTTAGAGTCAAACAAATTCATG
TAGGATCAAACCCCACTCAGTTTCCACCTAATCTATAATTGAATGAACAG
GTCAACCCCAAGAGGCACCTGCTTACACCAGGGTGGAAGTACGTTTTGGT
CCTTCCAAAGAGATTATTTGCTGGGGGAAACTTTTGTGGTCTTGAAAACA
ATAAATAACCCAGGGGCGAAAAACGGGGAAATACTTGGGGGGAATAAGGG
GTCTTTGGCTCATCACAAAAACCACCCTTGTTAAGGCCTTGGNCTTTTCT
NTTCCCAACCTTTGCCCCCTTNNGTTCTTTCCCCCCTTCTTTCTCCTGCT
TTTTTCTCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTCTTTCTTCCTTTCTCTTTTTTTTTCTTTTTTTCTCCCTTCCCTC
CTTTCTTTCTTTTCGCCCTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
TTTTTTNTNCTCTCTCCCNCCCCCTCTTTCCCCTCTCCTCCGGTTNCGCT
CGGGCCGCGCGGCGCTGCCCTCTCGTCTTTCTGGGCCGCTCGTGTG
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