DY305549

Overview
NameDY305549
Unique NameDY305549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1296
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 8.131e-39
Identity = 85/184 (46.20%), Postives = 105/184 (57.07%), Query Frame = 2
Query:  209 KIPSSNS----------DDLYRELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLF-RLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            K PSSN            ++  ELW ACAGPL+ +P  G  V YFPQGH EQ+ AS  Q+    IP +  LPSK++C + N+ L A+ ETDEVYAQ+TL P      +            R     F K LTASDTSTHGGFSV R+ A +  P LD +   P QELVAKD+H   W F+HI+R
Sbjct:    2 KAPSSNGVSPNPVEGERRNINSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASM-QKQTDFIPSYPNLPSKLICMLHNVTLNADPETDEVYAQMTLQPVNKYDRDALLASDMGLKLNRQPNEFFCKTLTASDTSTHGGFSVPRRAAEKIFPALDFSMQPPCQELVAKDIHDNTWTFRHIYR 184          

HSP 2 Score: 35.4242 bits (80), Expect = 8.131e-39
Identity = 18/33 (54.55%), Postives = 21/33 (63.64%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENNK 905
            PKRHLLT GW  V V  KRLFAG +   + + K
Sbjct:  187 PKRHLLTTGWS-VFVSTKRLFAGDSVLFIRDGK 218          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFO_ORYSJ (Auxin response factor 15 OS=Oryza sativa subsp. japonica GN=ARF15 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.782e-38
Identity = 80/166 (48.19%), Postives = 102/166 (61.45%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKV------HSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGP+  +P++G  V Y PQGH+E L  +             +P  + CRVV++ L+A+  TDEVYAQ++L+PE  +      D    D    K       H F K LTASDTSTHGGFSV R+ A +C PPLD +Q  P+QELVAKDLH  EWRF+HI+R
Sbjct:   38 ELWHACAGPVAPLPRKGGVVVYLPQGHLEHLGDAPAAAAAAAA----VPPHVFCRVVDVTLLADAATDEVYAQLSLVPEKEEVARRADDGEGEDGDGMKQRFARMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHSTEWRFRHIYR 199          

HSP 2 Score: 26.1794 bits (56), Expect = 6.782e-38
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L +G
Sbjct:  202 PRRHLLTTGWS-AFVNKKKLVSG 223          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFB_ORYSJ (Auxin response factor 2 OS=Oryza sativa subsp. japonica GN=ARF2 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 5.625e-37
Identity = 80/171 (46.78%), Postives = 103/171 (60.23%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPD-----PCPADS------PRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGP+  +P++G  V Y PQGH+E L A+         P   +P  + CRVV++ L A+  TDEVYAQ++L+ +  + E    +      C  +       P    H F K LTASDTSTHGGFSV R+ A +C PPLD +   P QELVAKDLHG EWRF+HI+R
Sbjct:   39 ELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSG-----PGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYR 204          

HSP 2 Score: 24.6386 bits (52), Expect = 5.625e-37
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    +  K+L +G
Sbjct:  207 PRRHLLTTGWS-GFINKKKLVSG 228          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFC_ORYSJ (Auxin response factor 3 OS=Oryza sativa subsp. japonica GN=ARF3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.910e-36
Identity = 80/171 (46.78%), Postives = 100/171 (58.48%), Query Frame = 2
Query:  242 RELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTT--------PDPCPADSPRPK--VHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            R+LW ACAGP+V +P++G  V Y PQGH+    A         + L   P  + CRVV++ L A+  TDEVYA++ L  E    E            D    D  R    +H F K LTASDTSTHGGFSV R+ A +C PPLD  Q  P+QELVAKDLHG +WRF+HI+R
Sbjct:   81 RDLWHACAGPVVSLPRRGSAVVYLPQGHLSAAGAGGGIRGEVAVAL---PPHVACRVVDVELCADAATDEVYARLALRAEGEVFERNLHGGGIEREDDMEDGDEERKSRMLHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDHKQLRPSQELVAKDLHGAKWRFRHIYR 248          

HSP 2 Score: 25.409 bits (54), Expect = 7.910e-36
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L +G
Sbjct:  251 PRRHLLTTGWS-SFVNKKKLVSG 272          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFN_ORYSJ (Auxin response factor 14 OS=Oryza sativa subsp. japonica GN=ARF14 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 1.814e-31
Identity = 72/171 (42.11%), Postives = 95/171 (55.56%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPS-----------QNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            ELW ACAGP V +P++G  + Y PQ H   L A              +P  + CRVV + L A+  TDEVYA++ L+ E             ++     + C A+      H F K LTASDTSTHGGFSV R+ A +C PPLD     P+QEL+A DLHG +W+F+HI+R
Sbjct:   23 ELWHACAGPGVALPRRGSALVYLPQAH---LAADGGGGEVPPAGAAAVPPHVACRVVGVELRADAATDEVYARLALVAEGEMLQRNFREGGGEDGAGEMEGCDAEKKPRMPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKTVRPSQELIAVDLHGTQWKFRHIYR 190          

HSP 2 Score: 24.2534 bits (51), Expect = 1.814e-31
Identity = 12/23 (52.17%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L +G
Sbjct:  193 PRRHLLTIGWS-SFVNRKKLVSG 214          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFH_ORYSJ (Auxin response factor 8 OS=Oryza sativa subsp. japonica GN=ARF8 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.152e-30
Identity = 69/162 (42.59%), Postives = 91/162 (56.17%), Query Frame = 2
Query:  242 RELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            R+LW ACAG +  VP  G  VYYFPQGH E        EL+      R+P+ + CRV ++  MA+ +TDEV+A+I L+P   +++     D   A     K  SF+K LT SD +  GGFSV R  A    P LD     P Q +VAKD+HG  W F+HI+R
Sbjct:   20 RQLWLACAGGMCTVPPVGAAVYYFPQGHAEHALGLAAPELSAA----RVPALVPCRVASVRYMADPDTDEVFARIRLVPLRAAEDGDVEEDGAAAGEEHEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPVQTVVAKDVHGVAWNFRHIYR 177          

HSP 2 Score: 27.7202 bits (60), Expect = 1.152e-30
Identity = 14/32 (43.75%), Postives = 18/32 (56.25%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLENN 902
            P+RHLLT GW    V  K+L AG +   L  +
Sbjct:  180 PRRHLLTTGWS-TFVNQKKLVAGDSIVFLRGD 210          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFJ_ARATH (Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.499e-30
Identity = 70/169 (41.42%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPS-----QNEP----TTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +LW ACAG +V +P     V+YF QGH E   A  +          R+P  ILCRVV++  +A+ ETDEV+A+ITLLP P      +N+     T P      + + K  SF+K LT SD +  GGFSV R  A    P LD +   P Q ++AKD+HG  W+F+HI+R
Sbjct:   10 QLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHAP------RVPPLILCRVVSVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYR 172          

HSP 2 Score: 28.1054 bits (61), Expect = 1.499e-30
Identity = 14/31 (45.16%), Postives = 18/31 (58.06%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGNFCGLEN 899
            P+RHLLT GW    V  K+L AG +   L +
Sbjct:  175 PRRHLLTTGWS-TFVNQKKLIAGDSIVFLRS 204          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSJ (Auxin response factor 10 OS=Oryza sativa subsp. japonica GN=ARF10 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.309e-30
Identity = 70/167 (41.92%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDPCPADS------PRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +LW ACAG +  VP  G  VYYFPQGH EQ  A+ +      +   R+P  + CRVV +  MA+ E+DEV+A+I L+P  P        +   A++       RP+  SF+K LT SD +  GGFSV R  A    P LD +   P Q + AKD+HG EW F+HI+R
Sbjct:   22 QLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVD------LSSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYR 182          

HSP 2 Score: 25.7942 bits (55), Expect = 3.309e-30
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L AG
Sbjct:  185 PRRHLLTTGWS-PFVNKKQLTAG 206          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFJ_ORYSI (Auxin responsive factor 10 OS=Oryza sativa subsp. indica GN=ARF10 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.309e-30
Identity = 70/167 (41.92%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDPCPADS------PRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +LW ACAG +  VP  G  VYYFPQGH EQ  A+ +      +   R+P  + CRVV +  MA+ E+DEV+A+I L+P  P        +   A++       RP+  SF+K LT SD +  GGFSV R  A    P LD +   P Q + AKD+HG EW F+HI+R
Sbjct:   22 QLWAACAGSMSSVPPVGAAVYYFPQGHAEQASAAVD------LSSARVPPLVPCRVVAVRFMADAESDEVFAKIRLVPLRPGDAVVDVGEAAAAEARREEENSRPRPTSFAKTLTQSDANNGGGFSVPRFCAETIFPELDYSSEPPVQSVCAKDVHGVEWTFRHIYR 182          

HSP 2 Score: 25.7942 bits (55), Expect = 3.309e-30
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L AG
Sbjct:  185 PRRHLLTTGWS-PFVNKKQLTAG 206          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFR_ORYSJ (Auxin response factor 18 OS=Oryza sativa subsp. japonica GN=ARF18 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.309e-30
Identity = 67/167 (40.12%), Postives = 93/167 (55.69%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDP-------CPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +LW ACAG +V +P    +VYYFPQGH E  +     E     P  R+P+ +LCRV  +  MA+ +TDEV+A+I L+P  +  +    D          A +   K  SF+K LT SD +  GGFSV R  A    P LD +   P Q ++AKD+HG  W+F+HI+R
Sbjct:   23 QLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVEF----PGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAAQEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKFRHIYR 185          

HSP 2 Score: 28.1054 bits (61), Expect = 3.309e-30
Identity = 19/47 (40.43%), Postives = 23/47 (48.94%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGNTWG 941
            P+RHLLT GW    V  K+L AG +  F   EN     G +R    G
Sbjct:  188 PRRHLLTTGWS-TFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGG 233          
The following BLAST results are available for this feature:
BLAST of DY305549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ARFG_ARATH8.131e-3946.20Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFO_ORYSJ6.782e-3848.19Auxin response factor 15 OS=Oryza sativa subsp. ja... [more]
ARFB_ORYSJ5.625e-3746.78Auxin response factor 2 OS=Oryza sativa subsp. jap... [more]
ARFC_ORYSJ7.910e-3646.78Auxin response factor 3 OS=Oryza sativa subsp. jap... [more]
ARFN_ORYSJ1.814e-3142.11Auxin response factor 14 OS=Oryza sativa subsp. ja... [more]
ARFH_ORYSJ1.152e-3042.59Auxin response factor 8 OS=Oryza sativa subsp. jap... [more]
ARFJ_ARATH1.499e-3041.42Auxin response factor 10 OS=Arabidopsis thaliana G... [more]
ARFJ_ORYSJ3.309e-3041.92Auxin response factor 10 OS=Oryza sativa subsp. ja... [more]
ARFJ_ORYSI3.309e-3041.92Auxin responsive factor 10 OS=Oryza sativa subsp. ... [more]
ARFR_ORYSJ3.309e-3040.12Auxin response factor 18 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BF02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305549 ID=DY305549; Name=DY305549; organism=Citrus sinensis; type=EST; length=1296bp
GGGCGTTTTCGTGGATTCTCCATAAGTTTTTAGAAAGAGAAGGGAGGCGG
TTTTGCTGGAGCTTTGCAACTAGAAGGCGGTTTTGTAACGGCTTTTAGTG
GTTTTCAGTTACAGTTTTGAGATCTCGCGATCGTTACGGATTGAAGAGAG
AGTTCGTGTCAGGACTCAAGTGCTTGTTCAGGAATCGAGAAAGTCTTTGA
GAGTTTATAAAATTCCGAGTAGTAATTCAGACGACTTGTACAGAGAGCTA
TGGAAGGCTTGTGCTGGTCCACTAGTCGACGTGCCGAAGCAAGGAGAGAG
GGTCTATTATTTTCCTCAAGGCCATATGGAACAATTAGAGGCATCTACGA
ATCAAGAACTGAATCAGAGGATTCCGTTGTTTCGTCTTCCGTCGAAGATT
CTATGTCGTGTTGTTAACATTCATCTCATGGCAGAACAAGAAACTGATGA
GGTTTATGCCCAGATTACTTTGCTGCCAGAACCAAGTCAAAATGAGCCTA
CAACTCCTGATCCATGCCCTGCTGATTCTCCAAGACCAAAAGTTCACTCA
TTCTCTAAGGTTTTAACTGCCTCTGATACAAGCACCCATGGAGGGTTTTC
TGTTCTTCGAAAGCATGCTACTGAATGCCTTCCTCCTCTGGACATGAATC
AGTCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGATATGAG
TGGCGATTTAAGCATATTTTCAGAGATTTTTAGAGTCAAACAAATTCATG
TAGGATCAAACCCCACTCAGTTTCCACCTAATCTATAATTGAATGAACAG
GTCAACCCCAAGAGGCACCTGCTTACACCAGGGTGGAAGTACGTTTTGGT
CCTTCCAAAGAGATTATTTGCTGGGGGAAACTTTTGTGGTCTTGAAAACA
ATAAATAACCCAGGGGCGAAAAACGGGGAAATACTTGGGGGGAATAAGGG
GTCTTTGGCTCATCACAAAAACCACCCTTGTTAAGGCCTTGGNCTTTTCT
NTTCCCAACCTTTGCCCCCTTNNGTTCTTTCCCCCCTTCTTTCTCCTGCT
TTTTTCTCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTCTTTCTTCCTTTCTCTTTTTTTTTCTTTTTTTCTCCCTTCCCTC
CTTTCTTTCTTTTCGCCCTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
TTTTTTNTNCTCTCTCCCNCCCCCTCTTTCCCCTCTCCTCCGGTTNCGCT
CGGGCCGCGCGGCGCTGCCCTCTCGTCTTTCTGGGCCGCTCGTGTG
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