DY305549
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 5.610e-30 Identity = 75/174 (43.10%), Postives = 97/174 (55.75%), Query Frame = 2 Query: 245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLE-----ASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDP-CP------ADSPRP-KVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724 +LW ACAG +V +P RVYYF QGH E + A+ EL R LP +LCRV + +A++++DEVYA+I L P P + E PD CP A P P K SF+K LT SD + GGFSV R A P LD P Q ++AKD+HG W+F+HI+R Sbjct: 16 QLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRA----LPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYR 185 HSP 2 Score: 27.335 bits (59), Expect = 5.610e-30 Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3 Query: 807 PKRHLLTPGWKYVLVLPKRLFAG 875 P+RHLLT GW V K+L AG Sbjct: 188 PRRHLLTTGWS-TFVNQKKLVAG 209
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 6.957e-27 Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 2 Query: 245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP----EPSQNE-PTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724 +LW ACAG +V +P +V+YFPQGH E + +P+ P +LCRV+ I MA+ E+DEV+A++ L+P E +E D +S K SF+K LT SD + GGFSV R A P LD N P Q ++AKD+HG W+F+HI+R Sbjct: 19 QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDFG---NLPI---PPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYR 177 HSP 2 Score: 27.335 bits (59), Expect = 6.957e-27 Identity = 19/47 (40.43%), Postives = 23/47 (48.94%), Query Frame = 3 Query: 807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGNTWG 941 P+RHLLT GW V K+L AG + F EN G +R G Sbjct: 180 PRRHLLTTGWSN-FVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGG 225
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2) HSP 1 Score: 104.375 bits (259), Expect = 3.204e-23 Identity = 62/166 (37.35%), Postives = 80/166 (48.19%), Query Frame = 2 Query: 242 RELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHS-----FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724 R +W ACA PL +P G +V YFP+GH EQ A L F LC + + L A+ T E YA I+LLP P P PA + + S ++K LT SD + GGFSV R A P L+++ P Q L DL G W F+HI+R Sbjct: 26 RLVWLACAAPLSRIPVVGTQVSYFPEGHAEQCPAPLPDPLPSAHRFF------LCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRYYAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYR 185 HSP 2 Score: 26.1794 bits (56), Expect = 3.204e-23 Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3 Query: 807 PKRHLLTPGWKYVLVLPKRLFAG 875 P+RHLLT GW V K+L AG Sbjct: 188 PRRHLLTTGWS-KFVNAKQLVAG 209
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 7.044e-23 Identity = 70/186 (37.63%), Postives = 95/186 (51.08%), Query Frame = 2 Query: 215 PSSNSDDL-YRE----LWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFR-LPSK---ILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTP-------DPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724 PS+ + D+ +RE +W+ACAG V +P RVYYFPQGH+E PL LPS + C + +I L+A+ TDEV+A + L P Q T D D+ KV +F+K+LT SD + GGFSV R A P L+ P Q+L D+HG W F+HI+R Sbjct: 4 PSATAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHC-----------CPLLSTLPSSTSPVPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNN--KVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYR 176 HSP 2 Score: 26.9498 bits (58), Expect = 7.044e-23 Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3 Query: 807 PKRHLLTPGWKYVLVLPKRLFAG 875 P+RHLLT GW V K+L AG Sbjct: 179 PRRHLLTTGWS-KFVNSKKLIAG 200
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: Y7838_ORYSJ (B3 domain-containing protein Os07g0183866/Os07g0183932 OS=Oryza sativa subsp. japonica GN=Os07g0183866/Os07g0183932 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 9.217e-14 Identity = 57/175 (32.57%), Postives = 82/175 (46.86%), Query Frame = 2 Query: 221 SNSDDLYRELWKACAGPLVD-VPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNE------PTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724 + + + R++W ACA P +P G VYYFP GH EQ + + L RI LC+V ++ L A T+E A I+L+P + + P PDP PA S + SF K LT +D + + A LP + +N P L KDL G EW F + ++ Sbjct: 231 TQAQQVTRDMWMACAAPKSGRLPTVGSLVYYFPDGHAEQCLSRPQEPLPGRI--------FLCKVTDVRLGA-AATNEALATISLVPIAADDHAFQLQAPADPDPAPAQS--QSLVSFVKPLTYTDVTKNRFMVPKDDAAAGVLPHIQLNDDVP---LRIKDLSGKEWAFNYTWK 391
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11 Identity = 56/164 (34.15%), Postives = 78/164 (47.56%), Query Frame = 2 Query: 242 RELWKACAGPLVDV-PKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKI---LCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIF 721 R++W ACA P V P G VYY P GH+EQ + + L RLP I C V ++ L + E+ E YA I+LLP S ++ T PA P F K L+ +D +++ VL A LPPLD+ + +DL G + F HI+ Sbjct: 21 RDVWHACAVPYSGVLPGVGTLVYYIPHGHIEQCAE------DPALLLSRLPDPIHPVPCTVADLVLDVDAESGEAYATISLLP-GSHDDTTARRQVPAHG-EPGFRFFEKQLSPADVTSNA--LVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIW 174
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11 Identity = 55/164 (33.54%), Postives = 72/164 (43.90%), Query Frame = 2 Query: 242 RELWKACAGPLVD-VPKQGERVYYFPQGHMEQLEASTNQELNQ-RIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEP-TTPDPCP---ADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKH 715 R +W ACA P +P G V+YF GH EQ L Q +P P LC V + L A+ T+E YA ITL P + P P P P A + ++ F K L +SD F+V A + PPL + Q L+ KDL G F + Sbjct: 18 RAMWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQLAVPG---PRVFLCTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPL--VDAKAVQPLIVKDLQGSPMTFDY 176 The following BLAST results are available for this feature:
BLAST of DY305549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >DY305549 ID=DY305549; Name=DY305549; organism=Citrus sinensis; type=EST; length=1296bpback to top |