DY305549

Overview
NameDY305549
Unique NameDY305549
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1296
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFV_ORYSJ (Auxin response factor 22 OS=Oryza sativa subsp. japonica GN=ARF22 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 5.610e-30
Identity = 75/174 (43.10%), Postives = 97/174 (55.75%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLE-----ASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP-EPSQNEPTTPDP-CP------ADSPRP-KVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +LW ACAG +V +P    RVYYF QGH E  +     A+   EL  R     LP  +LCRV  +  +A++++DEVYA+I L P  P + E   PD  CP      A  P P K  SF+K LT SD +  GGFSV R  A    P LD     P Q ++AKD+HG  W+F+HI+R
Sbjct:   16 QLWHACAGGMVQMPAPRSRVYYFAQGHAEHADGGGGAAAAAAELGPRA----LPPLVLCRVEGVQFLADRDSDEVYAKIRLAPVAPGEAEFREPDELCPLGAAGDAAEPSPEKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPKLDYRADPPVQTVLAKDVHGVVWKFRHIYR 185          

HSP 2 Score: 27.335 bits (59), Expect = 5.610e-30
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L AG
Sbjct:  188 PRRHLLTTGWS-TFVNQKKLVAG 209          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFP_ARATH (Auxin response factor 16 OS=Arabidopsis thaliana GN=ARF16 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.957e-27
Identity = 67/165 (40.61%), Postives = 93/165 (56.36%), Query Frame = 2
Query:  245 ELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLP----EPSQNE-PTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            +LW ACAG +V +P    +V+YFPQGH E      +      +P+   P  +LCRV+ I  MA+ E+DEV+A++ L+P    E   +E     D    +S   K  SF+K LT SD +  GGFSV R  A    P LD N   P Q ++AKD+HG  W+F+HI+R
Sbjct:   19 QLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDFG---NLPI---PPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYR 177          

HSP 2 Score: 27.335 bits (59), Expect = 6.957e-27
Identity = 19/47 (40.43%), Postives = 23/47 (48.94%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAGGN--FCGLENNK*PRGEKRGNTWG 941
            P+RHLLT GW    V  K+L AG +  F   EN     G +R    G
Sbjct:  180 PRRHLLTTGWSN-FVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGG 225          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFM_ORYSJ (Auxin response factor 13 OS=Oryza sativa subsp. japonica GN=ARF13 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.204e-23
Identity = 62/166 (37.35%), Postives = 80/166 (48.19%), Query Frame = 2
Query:  242 RELWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHS-----FSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            R +W ACA PL  +P  G +V YFP+GH EQ  A     L      F      LC +  + L A+  T E YA I+LLP         P P PA +   +  S     ++K LT SD +  GGFSV R  A    P L+++   P Q L   DL G  W F+HI+R
Sbjct:   26 RLVWLACAAPLSRIPVVGTQVSYFPEGHAEQCPAPLPDPLPSAHRFF------LCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRYYAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYR 185          

HSP 2 Score: 26.1794 bits (56), Expect = 3.204e-23
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L AG
Sbjct:  188 PRRHLLTTGWS-KFVNAKQLVAG 209          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFQ_ARATH (Auxin response factor 17 OS=Arabidopsis thaliana GN=ARF17 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.044e-23
Identity = 70/186 (37.63%), Postives = 95/186 (51.08%), Query Frame = 2
Query:  215 PSSNSDDL-YRE----LWKACAGPLVDVPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFR-LPSK---ILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTP-------DPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            PS+ + D+ +RE    +W+ACAG  V +P    RVYYFPQGH+E              PL   LPS    + C + +I L+A+  TDEV+A + L P   Q    T        D    D+   KV +F+K+LT SD +  GGFSV R  A    P L+     P Q+L   D+HG  W F+HI+R
Sbjct:    4 PSATAGDINHREVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHC-----------CPLLSTLPSSTSPVPCIITSIQLLADPVTDEVFAHLILQPMTQQQFTPTNYSRFGRFDGDVDDNN--KVTTFAKILTPSDANNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYR 176          

HSP 2 Score: 26.9498 bits (58), Expect = 7.044e-23
Identity = 13/23 (56.52%), Postives = 15/23 (65.22%), Query Frame = 3
Query:  807 PKRHLLTPGWKYVLVLPKRLFAG 875
            P+RHLLT GW    V  K+L AG
Sbjct:  179 PRRHLLTTGWS-KFVNSKKLIAG 200          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: Y7838_ORYSJ (B3 domain-containing protein Os07g0183866/Os07g0183932 OS=Oryza sativa subsp. japonica GN=Os07g0183866/Os07g0183932 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 9.217e-14
Identity = 57/175 (32.57%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  221 SNSDDLYRELWKACAGPLVD-VPKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNE------PTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIFR 724
            + +  + R++W ACA P    +P  G  VYYFP GH EQ  +   + L  RI         LC+V ++ L A   T+E  A I+L+P  + +       P  PDP PA S    + SF K LT +D + +         A   LP + +N   P   L  KDL G EW F + ++
Sbjct:  231 TQAQQVTRDMWMACAAPKSGRLPTVGSLVYYFPDGHAEQCLSRPQEPLPGRI--------FLCKVTDVRLGA-AATNEALATISLVPIAADDHAFQLQAPADPDPAPAQS--QSLVSFVKPLTYTDVTKNRFMVPKDDAAAGVLPHIQLNDDVP---LRIKDLSGKEWAFNYTWK 391          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: ARFT_ORYSJ (Putative auxin response factor 20 OS=Oryza sativa subsp. japonica GN=ARF20 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11
Identity = 56/164 (34.15%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  242 RELWKACAGPLVDV-PKQGERVYYFPQGHMEQLEASTNQELNQRIPLFRLPSKI---LCRVVNIHLMAEQETDEVYAQITLLPEPSQNEPTTPDPCPADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKHIF 721
            R++W ACA P   V P  G  VYY P GH+EQ         +  + L RLP  I    C V ++ L  + E+ E YA I+LLP  S ++ T     PA    P    F K L+ +D +++    VL   A   LPPLD+      +    +DL G  + F HI+
Sbjct:   21 RDVWHACAVPYSGVLPGVGTLVYYIPHGHIEQCAE------DPALLLSRLPDPIHPVPCTVADLVLDVDAESGEAYATISLLP-GSHDDTTARRQVPAHG-EPGFRFFEKQLSPADVTSNA--LVLPAGAEHVLPPLDIAAYQTARLFDVRDLRGKRFEFVHIW 174          
BLAST of DY305549 vs. ExPASy Swiss-Prot
Match: Y7833_ORYSJ (B3 domain-containing protein Os07g0183300/Os07g0183600 OS=Oryza sativa subsp. japonica GN=Os07g0183300/Os07g0183600 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 55/164 (33.54%), Postives = 72/164 (43.90%), Query Frame = 2
Query:  242 RELWKACAGPLVD-VPKQGERVYYFPQGHMEQLEASTNQELNQ-RIPLFRLPSKILCRVVNIHLMAEQETDEVYAQITLLPEPSQNEP-TTPDPCP---ADSPRPKVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMNQSTPTQELVAKDLHGYEWRFKH 715
            R +W ACA P    +P  G  V+YF  GH EQ        L Q  +P    P   LC V  + L A+  T+E YA ITL P    + P   P P P   A   + ++  F K L +SD      F+V    A +  PPL    +   Q L+ KDL G    F +
Sbjct:   18 RAMWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQLAVPG---PRVFLCTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPL--VDAKAVQPLIVKDLQGSPMTFDY 176          
The following BLAST results are available for this feature:
BLAST of DY305549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ARFV_ORYSJ5.610e-3043.10Auxin response factor 22 OS=Oryza sativa subsp. ja... [more]
ARFP_ARATH6.957e-2740.61Auxin response factor 16 OS=Arabidopsis thaliana G... [more]
ARFM_ORYSJ3.204e-2337.35Auxin response factor 13 OS=Oryza sativa subsp. ja... [more]
ARFQ_ARATH7.044e-2337.63Auxin response factor 17 OS=Arabidopsis thaliana G... [more]
Y7838_ORYSJ9.217e-1432.57B3 domain-containing protein Os07g0183866/Os07g018... [more]
ARFT_ORYSJ1.127e-1134.15Putative auxin response factor 20 OS=Oryza sativa ... [more]
Y7833_ORYSJ9.538e-1133.54B3 domain-containing protein Os07g0183300/Os07g018... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BF02RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305549 ID=DY305549; Name=DY305549; organism=Citrus sinensis; type=EST; length=1296bp
GGGCGTTTTCGTGGATTCTCCATAAGTTTTTAGAAAGAGAAGGGAGGCGG
TTTTGCTGGAGCTTTGCAACTAGAAGGCGGTTTTGTAACGGCTTTTAGTG
GTTTTCAGTTACAGTTTTGAGATCTCGCGATCGTTACGGATTGAAGAGAG
AGTTCGTGTCAGGACTCAAGTGCTTGTTCAGGAATCGAGAAAGTCTTTGA
GAGTTTATAAAATTCCGAGTAGTAATTCAGACGACTTGTACAGAGAGCTA
TGGAAGGCTTGTGCTGGTCCACTAGTCGACGTGCCGAAGCAAGGAGAGAG
GGTCTATTATTTTCCTCAAGGCCATATGGAACAATTAGAGGCATCTACGA
ATCAAGAACTGAATCAGAGGATTCCGTTGTTTCGTCTTCCGTCGAAGATT
CTATGTCGTGTTGTTAACATTCATCTCATGGCAGAACAAGAAACTGATGA
GGTTTATGCCCAGATTACTTTGCTGCCAGAACCAAGTCAAAATGAGCCTA
CAACTCCTGATCCATGCCCTGCTGATTCTCCAAGACCAAAAGTTCACTCA
TTCTCTAAGGTTTTAACTGCCTCTGATACAAGCACCCATGGAGGGTTTTC
TGTTCTTCGAAAGCATGCTACTGAATGCCTTCCTCCTCTGGACATGAATC
AGTCAACCCCAACTCAGGAATTGGTTGCCAAAGATCTTCATGGATATGAG
TGGCGATTTAAGCATATTTTCAGAGATTTTTAGAGTCAAACAAATTCATG
TAGGATCAAACCCCACTCAGTTTCCACCTAATCTATAATTGAATGAACAG
GTCAACCCCAAGAGGCACCTGCTTACACCAGGGTGGAAGTACGTTTTGGT
CCTTCCAAAGAGATTATTTGCTGGGGGAAACTTTTGTGGTCTTGAAAACA
ATAAATAACCCAGGGGCGAAAAACGGGGAAATACTTGGGGGGAATAAGGG
GTCTTTGGCTCATCACAAAAACCACCCTTGTTAAGGCCTTGGNCTTTTCT
NTTCCCAACCTTTGCCCCCTTNNGTTCTTTCCCCCCTTCTTTCTCCTGCT
TTTTTCTCCCCCCCCCCTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTT
TTTTTTCTTTCTTCCTTTCTCTTTTTTTTTCTTTTTTTCTCCCTTCCCTC
CTTTCTTTCTTTTCGCCCTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTT
TTTTTTNTNCTCTCTCCCNCCCCCTCTTTCCCCTCTCCTCCGGTTNCGCT
CGGGCCGCGCGGCGCTGCCCTCTCGTCTTTCTGGGCCGCTCGTGTG
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