DY305546

Overview
NameDY305546
Unique NameDY305546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1115
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305546 vs. ExPASy Swiss-Prot
Match: NP1L1_PONAB (Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.426e-12
Identity = 56/215 (26.05%), Postives = 96/215 (44.65%), Query Frame = 1
Query:  190 DELEKINEEASEKV-LEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVE-DFKDVKSGYSITFNFSPNPYFEDNKLTKTFTF-----------LDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK---------RPLAEESFFTWFSDTQEKDTIDGIQD---------EVAEIIKEDLWPNPLTYF 741
            DE ++I+EE  EK  +E E+K  E   P         K IP+FWLT F +   L +++ E D+ I ++L  ++V+         + + F+F PN YF +  LTKT+              D    M  T   I WK+G  +      +K+ +K         + ++ +SFF +F+  +  ++ D   D         E+   ++E + P  + YF
Sbjct:  137 DEEDEISEELKEKAKIEDEKKDEEKEDP---------KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSGAGQPMSFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYF 342          
BLAST of DY305546 vs. ExPASy Swiss-Prot
Match: NPL1B_XENLA (Nucleosome assembly protein 1-like 1-B OS=Xenopus laevis GN=nap1l1-B PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.863e-12
Identity = 62/266 (23.31%), Postives = 110/266 (41.35%), Query Frame = 1
Query:  166 IEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII-------------------------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDV--KSGYSITFNFSPNPYFEDNKLTKTFTF-----------LDDDGSMKITATSIKWKEGMG-----IPNGVNHEKKGNKRPLAE----ESFFTWFS--DTQEKDTIDGIQD-------EVAEIIKEDLWPNPLTYF 741
            +  L+ +Q +  +I  +  E+V E+E+KY+ + +P ++KR+DII                                           K IP+FWLT F +   L +++ E D+ I ++L  ++V+ F +      + + F+F PN +F +  LTKT+              D    M  T   I WK+G       I     H+ +G  R + +    +SFF +FS  +  E   +D   +       E+   ++E + P  + YF
Sbjct:   79 VNALKNLQVKCAQIEAKFYEEVHELERKYAALYQPFFEKRSDIINASYEPTEEECEWKVDEEEDIAEDLKEKAKLEEEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVK-FSEAGQPMNFMLEFHFEPNEFFTNELLTKTYKMRSEPDESDPFSFDGPEIMGCTGCLIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVPNDSFFNFFSPPEVPENGELDDDAEAILTADFEIGHFLRERIIPRSVLYF 343          
BLAST of DY305546 vs. ExPASy Swiss-Prot
Match: YCO6_SCHPO (Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe GN=SPCC364.06 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.433e-12
Identity = 54/279 (19.35%), Postives = 113/279 (40.50%), Query Frame = 1
Query:  103 GKKTKVEEENAEQIDSELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII---------------------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKI------TATSIKWKEGMGIPNGVNHEKKGNKR---------PLAEESFFTWF------------SDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 741
            G    +  E   ++   +   I  L+ +Q     +  +  +++ E+E+ Y++   P++ +R++++                                       K IP+FWLTA  +  +L E+++ ED+    +L  + +   +  K G+ + F F+ NP+F +  LTKT+ ++++ G   +          + WKE   +      +K+ NK           +  +SFF +F            S++ E D +  +  ++ E  KE L P  + +F
Sbjct:   58 GSLLHLTSEGVSELPEAVQRRISGLRGLQKRYSDLESQFQKELFELEKAYAKKYAPIFKRRSEVVRGADEPTEEEIKKGEAADENEKKEPTSSESKKQEGGDDTKGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYME--KPGFKLEFEFAENPFFTNKILTKTYYYMEESGPSNVFLYDHAEGDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVSVPRDSFFNFFNPPTPPSEEDEESESPELDELLELDYQIGEDFKEKLIPRAVEWF 334          
BLAST of DY305546 vs. ExPASy Swiss-Prot
Match: NP1L1_RAT (Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.150e-12
Identity = 57/216 (26.39%), Postives = 97/216 (44.91%), Query Frame = 1
Query:  190 DELEKINEEASEKV-LEVEQKYSEIRKPVYDKRNDIIKSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDV--KSGYSITFNFSPNPYFEDNKLTKTFTF-----------LDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK---------RPLAEESFFTWFSDTQEKDTIDGIQD---------EVAEIIKEDLWPNPLTYF 741
            DE ++++EE  EK  +E E+K  E   P         K IP+FWLT F  +  L +++ E D+ I ++L  ++V+ F D      + + F+F PN YF +  LTKT+              D    M  T   I WK+G  +      +K+ +K         + +++ SFF +F+  +  +  D   D         E+   ++E + P  + YF
Sbjct:  137 DEEDEVSEELKEKAKIEDEKKDEEKEDP---------KGIPEFWLTVF-KNDLLSDMVQEHDEPILKHLKDIKVK-FSDAGQPMSFILEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVRTVTKTVSKTSFFNFFAPPEVPENGDLDDDXEAILAADFEIGHFLRERIIPRSVLYF 341          
BLAST of DY305546 vs. ExPASy Swiss-Prot
Match: NAP1_DICDI (Probable nucleosome assembly protein OS=Dictyostelium discoideum GN=nap1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.420e-12
Identity = 58/248 (23.39%), Postives = 113/248 (45.56%), Query Frame = 1
Query:  148 SELVLSIEKLQEIQDELEKINEEASEKVLEVEQKYSEIRKPVYDKRNDII----------------------------KSIPDFWLTAFISHPALGELLSEEDQKIFRYLSSLEVEDFKDVKSGYSITFNFSPNPYFEDNKLTKTFTFLDDDGSMKITATSIKWKEGMGIPNGVNHEKKGNK-RPLAEES--------------FFTWF-------SDTQEKDTIDGIQDEVAEIIKEDLWPNPLTYF 741
            +E++  +  L  +QD   ++ E+  +++LE+E+KY +  +P+ +KR +I+                            K IP FWL   + +  + +++ E D +   YL  +++    D +  YS+ F+FS NP+F +  ++KT    +D+   +I +T I WK+G      V  +KK  K +P   ++              FF+ F       +  +E D I  IQ ++   +K+ + P  + +F
Sbjct:   21 TEVLDRVNALLTLQDTQNELTEQMEKEILEIEKKYLKKFQPLAEKRFEIVSGKVEPTKEDQQCKAPIQVENLKSVPTDKGIPKFWLHV-LQNTEVKDIIEECDIEALEYLVDIKIVQVGDAQD-YSLDFHFSENPFFTNTVISKTVKLEEDNELNEIVSTPINWKDGKNFT--VQSKKKTVKSKPTKGKAATTTSTTVQEVVPCFFSTFVSPNQDPTSDEEADEIMYIQYQIIAKLKDIVIPEAVNFF 264          
The following BLAST results are available for this feature:
BLAST of DY305546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
NP1L1_PONAB1.426e-1226.05Nucleosome assembly protein 1-like 1 OS=Pongo abel... [more]
NPL1B_XENLA1.863e-1223.31Nucleosome assembly protein 1-like 1-B OS=Xenopus ... [more]
YCO6_SCHPO2.433e-1219.35Putative nucleosome assembly protein C364.06 OS=Sc... [more]
NP1L1_RAT4.150e-1226.39Nucleosome assembly protein 1-like 1 OS=Rattus nor... [more]
NAP1_DICDI5.420e-1223.39Probable nucleosome assembly protein OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BE10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305546 ID=DY305546; Name=DY305546; organism=Citrus sinensis; type=EST; length=1115bp
GGTTTTAGGCACTCGTCGAGCGAGCGAGTTAGGGTTATTTAATTTTTATT
TTATTTGTTTGTTATTTTAATAGCTACCAAGAGCAAAATGGTGGCAGACA
AGGGCAAAAAAACCAAAGTTGAAGAAGAAAACGCAGAGCAAATTGACTCA
GAACTTGTTCTTTCCATCGAGAAACTCCAAGAGATCCAAGACGAGCTTGA
AAAGATTAACGAAGAGGCAAGCGAGAAAGTCTTGGAGGTTGAGCAGAAAT
ACAGTGAGATACGCAAGCCAGTCTATGATAAGCGAAATGATATCATCAAA
TCCATACCTGACTTCTGGTTAACTGCCTTTATTAGTCATCCTGCTCTCGG
TGAACTTTTGAGTGAAGAGGATCAGAAGATATTCAGGTACTTGAGCTCTC
TGGAAGTGGAGGATTTTAAAGATGTCAAATCAGGATACTCCATCACATTT
AACTTCTCCCCCAATCCCTATTTTGAAGATAACAAACTTACCAAGACTTT
CACCTTCCTTGATGATGATGGTTCAATGAAAATTACTGCTACATCAATCA
AGTGGAAAGAGGGCATGGGCATACCAAATGGAGTTAATCATGAGAAGAAA
GGAAACAAGCGGCCATTGGCGGAAGAAAGCTTCTTTACCTGGTTCAGTGA
TACCCAAGAGAAGGATACTATTGATGGTATCCAAGATGAGGTTGCAGAGA
TTATCAAGGAGGATTTATGGCCCAATCCTCTCACTTATTTTAACAATGAA
GCTGATGAAGAGGAGTTTGAAGGCGATGAAGAGGGTAAAGAAGATGATGA
CTCTGAAGATGATGAAGATGATCAAGAGGAAGATGATGATGATGAAGACG
GTGATGATGAAGGCAACTGAGTTATCTTCATCCTAATCCGATATCAGCTT
ATGTTAAATGTCCTTGCTTCGGTAAACTTTGGTGTAAAGTGGTTTTCTGT
GGTTTGCTCAGTAGGGTGACAAGGGAAGGGCAACCACTTCAACTCTTATG
AATACCTTTTTTGGCTAGTGGGAAGGCCACCGAACGAAATCGGTTTCCTT
TTATTTTAGGGCCCTTTTCCGGGGTTCCCGGGGGTTTAATTTTGGGAGAT
TTCCCCCCCTTATCT
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