DY305518

Overview
NameDY305518
Unique NameDY305518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1253
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPB2_HUMAN (Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE=1 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 1.128e-77
Identity = 145/302 (48.01%), Postives = 203/302 (67.22%), Query Frame = 2
Query:    5 RLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATXGVHPPAEDYVNHADKSYMTLVEAFKNMQ 910
            RLNY VGGE+ T+ HLDR MYLLGY+   +R+YL DKE N++ Y+LL+S++EY+T VMR D   A+++LP+IPKE    VA FLE +G  ++A+ V+TDP++RFELA+QLG L++A ++A E +SE KWKQL ELA+S  +  +A+ C+  A D            +A  ++KLA  A+  GKNNVAF+  F+ GK++ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ Y          ++E  K+ Q
Sbjct:  542 RLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIISYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEEGKDFQ 843          
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPB2_MACFA (Coatomer subunit beta' OS=Macaca fascicularis GN=COPB2 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 4.288e-77
Identity = 144/302 (47.68%), Postives = 202/302 (66.89%), Query Frame = 2
Query:    5 RLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATXGVHPPAEDYVNHADKSYMTLVEAFKNMQ 910
            RLNY VGGE+ T+ HLDR MYLLGY+   +R+YL DKE N++ Y+LL+S++EY+T VMR D   A+++LP+IPKE    VA FLE +G  ++A+ V+TDP++RFELA+QLG L++A ++A E +SE KWKQL ELA+S  +  +A+ C+  A D            +A  ++KLA  A+  GKNNVAF+  F+ GK++ CL+LL+ + R+PEAA +AR+YLPS+VS +V +WR++L KVN KAAESLADP EY NLF   + A  VE     T     PA+ +          ++E  K  Q
Sbjct:  542 RLNYYVGGEIVTIAHLDRTMYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGFKQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNANMVNKLAEGAERDGKNNVAFMSYFLQGKVDACLELLIRTGRLPEAAFLARTYLPSQVSRVVKLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQHPLVTPNEERNVMEEAKGFQ 843          
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPB2_DROME (Coatomer subunit beta' OS=Drosophila melanogaster GN=beta'Cop PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 1.477e-69
Identity = 127/267 (47.57%), Postives = 184/267 (68.91%), Query Frame = 2
Query:    5 RLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVE 805
            R+NY VGGE+ T+ HLDR MYLLGY+   +R+YL DKE NV+ + L LS++EY+T VMR D ERA+ +LP+IPKEH   VA FLE +G   +A++V+TD D++F+LA+Q+G LE+A ++A E ++  KW QL ++A S   + + + CM++A D            DA+ +  + +    QG +N+AFL  F+   +E CL++L+E+NR+PEAA  AR+YLPS++S IV +WR+ L KVN KA +SLADP +Y+NLF     AL VE
Sbjct:  544 RINYYVGGEIVTVSHLDRTMYLLGYVPKDNRIYLGDKELNVISFCLQLSVLEYQTAVMRRDFERADVVLPTIPKEHRTRVAHFLEKQGFKSQALQVSTDADHKFDLALQIGDLEIALKLARESENSQKWSQLADVASSKNNMSLVKECMQKANDLSGLLLLSTASGDAQLLEVVGAAGSAQGHHNLAFLSAFLRSDVERCLEILIETNRLPEAAFFARTYLPSQMSRIVELWREKLGKVNEKAGQSLADPAQYTNLFPGLGDALRVE 810          
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPB2_DICDI (Coatomer subunit beta' OS=Dictyostelium discoideum GN=copb2 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 4.448e-66
Identity = 127/288 (44.10%), Postives = 191/288 (66.32%), Query Frame = 2
Query:    5 RLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLC-LFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATXGVHPPAEDYVNHA 865
            +LNYCVG EV T+ HL++ MYLL YL    R+YL DK  N++ Y L +S+I Y+T ++RGDLE A  ILP IP++  NS+A FLES+G  E+A+EV+TD D+RFELAIQL  L+VA EIA +  SE+K+K LG+LA+S G++++AE C+K+A D            D EG+  LA L++E+G+ N++F+C L +   L +CL  L  S    EAA MAR+YLPS V ++V  W++ L+  + KA+++L++P ++ NLF  + +++  E    +       + DY+ +A
Sbjct:  544 KLNYCVGTEVVTISHLEKHMYLLKYLPQSGRLYLSDKNLNIVSYKLHISVISYQTSILRGDLEGAERILPKIPQDQRNSIAHFLESQGYKEKALEVSTDLDHRFELAIQLENLDVAHEIALKSDSETKFKHLGDLALSIGEIKLAENCLKKAEDLPGLLLLYTSTGDIEGMKMLAKLSEEKGQTNISFICNLLLPNSLLNCLNTLCASGDYSEAAFMARTYLPSMVPDMVEKWKESLKSTSSKASDALSNPIDFPNLFPQYDLSIKAEKYFESLRSQPKSSFDYLKNA 831          
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPB2_CAEEL (Probable coatomer subunit beta' OS=Caenorhabditis elegans GN=F38E11.5 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 5.266e-59
Identity = 116/284 (40.85%), Postives = 176/284 (61.97%), Query Frame = 2
Query:    5 RLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDL----QKVNPKAAESLADPEEYSNLFDDWQVALAVESKAAATXGVHPPA 844
            R+NY VGGE+ T+ H+DRP+YLLGY+A +SRVY +DK+ NV+ Y LLLS++EY+T VMR D + A+++L +IPKE    VA FLE +G  ++A+ V+ DPD++F+L++ LG L+ A ++A +  SE KWK L   A    +L +A  C+ +A D             A  + KLA  +     +N++FL   +LG ++ CL  L+ + R+PEAA +AR++ PS+VS I+ +W+       +K + K  ESLADP +Y NLF  +  +L  ES       +  PA
Sbjct:  541 RINYYVGGEIVTIAHVDRPLYLLGYMAKESRVYAVDKDLNVISYKLLLSVLEYQTAVMRRDFDTADKVLTTIPKEQRTRVAHFLEKQGFKKQALAVSQDPDHKFDLSVALGDLKTAYDLALQSDSEEKWKALSNAATLKSELLLAGECLGRARDFGGLMLLATCAGSAPLLQKLADDSAAAESHNISFLSSLLLGDIDACLDKLISTGRLPEAAFLARTHAPSRVSSILELWKAKASGHSEKSSRKIGESLADPVKYENLFPGFTQSLKAESFVREISKIPVPA 824          
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPB2_SCHPO (Probable coatomer subunit beta' OS=Schizosaccharomyces pombe GN=sec27 PE=2 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.223e-41
Identity = 86/252 (34.13%), Postives = 143/252 (56.75%), Query Frame = 2
Query:    5 RLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLQK-VNPKAAESLADPE 757
            RLNY +G +   + +++   YLLGY+    R+YL D++ NV+ Y+  L++IEY++LV++GDLE A  +L  I +     ++ FL   G  E A+E++ D   RFELA+   RL++A +IA E+    KW+ LG+ A++     +A+ C ++  D            + EG+ +L+ L K    NN AF+C ++  +  +C+ +L  + R PEA L A +Y P +V  ++  W+ DL K    + A+SL D E
Sbjct:  542 RLNYLIGDQTYKIANVESSFYLLGYIPRDDRIYLTDRDMNVVSYSFNLAIIEYQSLVLKGDLEAAQGLLEQISETDRPRLSDFLSRLGYKEAALELSGDSVQRFELALDAQRLDIASQIAQELDDPLKWRSLGDAALNAWDFVLAQECFEKGKDYGSLVLLYTATNNHEGLKELSQLTKSTKINNTAFICSWLTNQPAECVNILTSTQRYPEANLFAATYCPDEVKNVLPEWKVDLTKNQKERIADSLGDLE 793          
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPB2_YEAST (Coatomer subunit beta' OS=Saccharomyces cerevisiae GN=SEC27 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 7.906e-39
Identity = 86/240 (35.83%), Postives = 144/240 (60.00%), Query Frame = 2
Query:    5 RLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANE-ILPSIP-KEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY--LPSKVSEIVAIWRKDL 712
            RLNY VGG+   + H  + MYLLGYLA  ++VYL D+E +V GY + L ++E++TL +RG++E A E +LP++  K+    +ARFLE +   EEA+ ++ D D +FELA+++G+L +A+++ T+  +E KW+ LG+ ++     ++A      A D            + EG+  LA  A+  GK N+AF   ++ G ++    LL++S R  EAA +  +Y      V++IV  W+++L
Sbjct:  554 RLNYFVGGKTYNLAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAVEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAERAGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDDAVNDIVTKWKENL 793          
BLAST of DY305518 vs. ExPASy Swiss-Prot
Match: COPA_SCHPO (Putative coatomer subunit alpha OS=Schizosaccharomyces pombe GN=SPBPJ4664.04 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.131e-11
Identity = 56/247 (22.67%), Postives = 114/247 (46.15%), Query Frame = 2
Query:   20 VGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKEFNVMGYTLLLSLIEYKTLVMRGDLERANEILPSIPKEHHNSVARFLESRGMIEEAIEVATDPDYRFELAIQLGRLEVAQEIATEVQSESKWKQLGELAMSTGKLEMAEGCMKQAMDXXXXXXXXXXXXDAEGISKLASLAKEQGKNNVAFLCLFMLGKLEDCLQLLVESNRIPEAALMARSY-LPSKVSEIVAIWRKDLQKVN-PKAAESLADP 754
            + G+   +  L+  +YL+   A  + V+ +++    + + +  +   +K  ++R D E+   ++ +        +A +L+ +G  E A++   DP  RFELA++ G LE A E+A  +     W +L   AMS G  ++AE   ++               +AE + K+A +A+++      F     L ++E  + +L ++   P A L A+S  L  K  +I++   K  +++  P    +   P
Sbjct:  561 MSGDTGVIKTLESTLYLVK--AKGNMVFALNRAAEPVSFEIDPTEYLFKLALLRKDYEQVLHLIQNSNLVGQAIIA-YLQKKGYPEIALQFVEDPSTRFELALECGNLETALELARTIDRPEVWSRLASDAMSYGNHKIAEITFQKLRYFEKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVESRINILEQAGMYPIAYLTAKSNGLEEKAQQILSHCNKTEEEIKLPSLGSAFTTP 804          
The following BLAST results are available for this feature:
BLAST of DY305518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
COPB2_HUMAN1.128e-7748.01Coatomer subunit beta' OS=Homo sapiens GN=COPB2 PE... [more]
COPB2_MACFA4.288e-7747.68Coatomer subunit beta' OS=Macaca fascicularis GN=C... [more]
COPB2_DROME1.477e-6947.57Coatomer subunit beta' OS=Drosophila melanogaster ... [more]
COPB2_DICDI4.448e-6644.10Coatomer subunit beta' OS=Dictyostelium discoideum... [more]
COPB2_CAEEL5.266e-5940.85Probable coatomer subunit beta' OS=Caenorhabditis ... [more]
COPB2_SCHPO2.223e-4134.13Probable coatomer subunit beta' OS=Schizosaccharom... [more]
COPB2_YEAST7.906e-3935.83Coatomer subunit beta' OS=Saccharomyces cerevisiae... [more]
COPA_SCHPO3.131e-1122.67Putative coatomer subunit alpha OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1BB05RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305518 ID=DY305518; Name=DY305518; organism=Citrus sinensis; type=EST; length=1253bp
CTGGAGACTTAATTACTGTGTTGGCGGTGAGGTAACCACAATGTTTCATT
TGGACCGGCCTATGTACTTGTTGGGGTACCTTGCTAGTCAAAGCCGTGTG
TATCTGATTGACAAAGAGTTCAATGTTATGGGATACACATTGCTTCTCAG
CTTGATTGAGTACAAGACTCTTGTCATGCGTGGAGATTTGGAGAGGGCCA
ATGAAATCTTACCTTCAATTCCAAAAGAGCATCACAATAGTGTGGCTCGT
TTCCTGGAGTCACGAGGTATGATAGAGGAAGCTATAGAAGTGGCTACTGA
CCCCGATTATAGATTCGAACTAGCCATACAGCTGGGCAGATTGGAGGTTG
CACAGGAAATAGCTACAGAAGTGCAGAGTGAGTCTAAATGGAAGCAATTG
GGAGAATTAGCTATGTCCACTGGAAAGTTGGAAATGGCTGAGGGATGCAT
GAAACAAGCAATGGATTTGAGTGGTTTGTTGCTGCTCTATTCTTCTTTAG
GAGACGCCGAAGGGATATCCAAACTTGCTTCTCTAGCTAAAGAGCAAGGA
AAGAACAATGTTGCATTCCTTTGTTTATTTATGTTGGGTAAATTGGAAGA
CTGCCTCCAGCTGTTAGTGGAAAGTAATCGGATACCTGAGGCTGCTTTGA
TGGCAAGATCATACCTTCCAAGCAAGGTTTCAGAGATTGTTGCTATTTGG
AGAAAAGACCTCCAAAAGGTGAACCCAAAAGCTGCTGAATCTCTGGCTGA
TCCTGAAGAGTATTCTAATCTATTTGATGATTGGCAAGTTGCTCTTGCTG
TTGAGTCCAAAGCTGCTGCTACCANGGGTGTACATCCTCCTGCAGAGGAC
TATGTAAACCATGCAGATAAATCATACATGACCCTTGTGGAAGCTTTCAA
AAACATGCAAATTGAAAAACAAGGACCTCCTTAAAAATGAAGATCTTGCT
CATGAGGGTTCCAAACAAATGGAAAAGAAAAATGCAGAAGAACAAGAATG
GAAAAAAAGGGAACCCAAAAAGAGCCCGGTCGAAAGGGAAGCTGAATTCC
AAACAACGGGGGCAATATTTCGTAACCGGAAACCAAGGCCAAAAAAAACG
TGGGGGGAAAAAAAAAAAGAAAGGGAATCCCCGTCCCCCCCCAAAAAACA
ATTGTTTTCTTTAAAACCCACCTTTTCTCCAGGAAATTTCTTAAAGGGAA
AACAAAAACGGCGTCTCTCTTGTCTTTTTTAAAAAAATCTCCCCCCTCTT
CTT
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