DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.681e-28
Identity = 72/182 (39.56%), Postives = 105/182 (57.69%), Query Frame = 2
Query:  269 PVLVLK--DSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIA--MAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            P ++L+  D   R  G     ANI A KAVA I+R++LGP+ M KML    G I +TNDG  IL ++DV +  AK M+ELSR+QD E+GDGTT V+V+AG +L  AE  +D+  HP  I   Y  A   AV  L++IA     D N+   ++    + + +K  ++    +A++A+ A   V
Sbjct:   11 PFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDVNNYEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAV 192          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.808e-28
Identity = 62/170 (36.47%), Postives = 105/170 (61.76%), Query Frame = 2
Query:  296 KRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E + +  HPT I   Y  A ++AV  + + + +  D   +  ++   K+ + +K     GD  A++ +DA   V
Sbjct:   10 ERTTGESIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSIIGGYRLACKEAVRYINENLIINTDELGKDCLINAAKTSMSSKIIGIDGDFFANMVVDAVLAV 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.279e-28
Identity = 58/169 (34.32%), Postives = 104/169 (61.54%), Query Frame = 2
Query:  248 LDTIMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQ 754
            +  ++  P+++LK+      G     +NI A  A+ D +RTTLGPR M K++  +   + ++NDG  +++ LD+ HPAA+++++++++QD EVGDGTTSV++LAGE L  A+ F+++  HP +I RA+  A E A   + ++++ I   +   M   ++ C  T   S+
Sbjct:    1 MSQMIRPPIVLLKEGTDTSQGLPQLISNINACCAIVDTVRTTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELSVDIKPEN---MREFLEKCASTSMNSK 166          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPA_MACFA (T-complex protein 1 subunit alpha OS=Macaca fascicularis GN=TCP1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 6.279e-28
Identity = 65/182 (35.71%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  260 MHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVL-DKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            M  P+ V  D   R +G  +   N+ A+ ++A+I++++LGP  + KML+D  G + +TNDG  IL+ L+V HPAAK + EL+  QD+EVGDGTTSV+++A E+L  A+E   +  HPT +   Y  A ++AV  + + + +  D   R  ++   K+ + +K     GD  A++ +DA   +
Sbjct:    1 MEGPLSVFGD---RSTGEAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELGKQKIHPTSVISGYRLACKEAVRYINENLIVNTDELGRDCLINAAKTSMSSKIIGINGDFFANMVVDAVLAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.315e-27
Identity = 68/183 (37.16%), Postives = 109/183 (59.56%), Query Frame = 2
Query:  269 PVLVLKDSLKRE--SGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGT---KFTSQFGDLIADLAIDATTTV 802
            P ++L++  K+    G   H ANI A+KA+A I+RT+LGP+ M KML    G + +TNDG  IL  +DV +  AK ++ELSR+QD ++GDGTT V+V+AG +L  AE+ +++  HP  +   Y  A   AV  L+ I+   + +    +  LV++C+ T   K  S+    +A++++ A   V
Sbjct:   11 PFIILREQEKKSRLQGLDAHKANIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFS-ATDIEPLVQTCMTTLSSKIVSRCKRALAEISVKAVLAV 192          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.547e-26
Identity = 69/183 (37.70%), Postives = 107/183 (58.47%), Query Frame = 2
Query:  269 PVLVLKDSLKRE--SGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGT---KFTSQFGDLIADLAIDATTTV 802
            P ++L++  K+    G     ANI A K+VA I+RT+LGP+ M KML    G + +TNDG  IL  +DV +  AK M+ELSR+QD ++GDGTT V+V+AG +L  AE+ +++  HP  +   Y  A   AV  L+ I+   + +    +  LV++C+ T   K  S+    +A++A+ A   V
Sbjct:   11 PFIILREQEKKSRLQGLDAQKANIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFS-ATDIEPLVQTCMTTLSSKIVSRCKRALAEIAVKAVLAV 192          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 7.675e-26
Identity = 52/158 (32.91%), Postives = 99/158 (62.66%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML+  +G I +T DGN +L+E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP ++   +  A E A+ VL+++ +  +  DR T++ + K+ + TK  ++  D++ +  +D+   V
Sbjct:   22 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLQEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIVAEGFEIAKEKALEVLEQVKVTKEM-DRETLIDVAKTSLRTKVHTELADILTEAVVDSVLAV 178          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.002e-25
Identity = 63/180 (35.00%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGG--IVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND---RATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            +P+ +L  +   E G     ++   + A+ D+++TTLGP+ M K+L+ AS    +++TNDG  IL ++ + +PAAK ++++SRTQD+EVGDGTTSV VLAGE+L   E  + +  HP  I   +  ALE A A L        ++    R  +L + ++ + +K      D  A++ +DA
Sbjct:    6 APIPILNQNASEERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFREDLLNIARTTLSSKILHTEKDHFANMVVDA 185          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.309e-25
Identity = 60/206 (29.13%), Postives = 119/206 (57.77%), Query Frame = 2
Query:  257 IMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND----RATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVDLGQ---GLREVDIKKCI 853
            +M  P+++LK+      G      NI A + + DI++TTLGPR M K++      + +TNDG  ++  L+++HPAA  +++++++QD+EVGDGTTSV+V+AGE+L+ A+  ++    P +I   +  A   A+  L+++++     +    R+ +L   ++ + +K  S   +   +L ++A   +G +L +   G+++V    C+
Sbjct:    4 LMSLPIVLLKEGTDTAQGRSQIIRNINACQIIVDIVKTTLGPRGMDKLIY-TERDVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAVYKLGDNLDKSNIGIKKVTGGSCL 208          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_RABIT (T-complex protein 1 subunit zeta OS=Oryctolagus cuniculus GN=CCT6 PE=2 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 1.710e-25
Identity = 52/158 (32.91%), Postives = 99/158 (62.66%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML+  +G I +T DGN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP +I   +  A E A+ VL++I ++ +  DR T++ + ++ + TK  ++  D++ +  +D+   +
Sbjct:   23 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQVLEQIKVSREM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI 179          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPE_ARATH3.681e-2839.56T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPA_MONDO4.808e-2836.47T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPH_DICDI6.279e-2834.32T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPA_MACFA6.279e-2835.71T-complex protein 1 subunit alpha OS=Macaca fascic... [more]
TCPE1_AVESA5.315e-2737.16T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE2_AVESA1.547e-2637.70T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPZ_CHICK7.675e-2632.91T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPB_DICDI1.002e-2535.00T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPH_PLAF71.309e-2529.13T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
TCPZ_RABIT1.710e-2532.91T-complex protein 1 subunit zeta OS=Oryctolagus cu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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