DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 8.486e-25
Identity = 50/158 (31.65%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML+  +G I +T DGN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP +I   +  A E A+  L+++ ++ +  DR T++ + ++ + TK  ++  D++ +  +D+   +
Sbjct:   23 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVSREM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 8.486e-25
Identity = 50/158 (31.65%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML+  +G I +T DGN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP +I   +  A E A+  L+++ ++ +  DR T++ + ++ + TK  ++  D++ +  +D+   +
Sbjct:   23 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 8.486e-25
Identity = 50/158 (31.65%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML+  +G I +T DGN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP +I   +  A E A+  L+++ ++ +  DR T++ + ++ + TK  ++  D++ +  +D+   +
Sbjct:   23 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEEVKVSREM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 8.486e-25
Identity = 50/158 (31.65%), Postives = 98/158 (62.03%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML+  +G I +T DGN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP +I   +  A E A+  L+++ ++ +  DR T++ + ++ + TK  ++  D++ +  +D+   +
Sbjct:   23 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEM-DRETLIDVARTSLRTKVHAELADVLTEAVVDSILAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_SCHPO (T-complex protein 1 subunit zeta OS=Schizosaccharomyces pombe GN=cct6 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.212e-24
Identity = 58/172 (33.72%), Postives = 99/172 (57.56%), Query Frame = 2
Query:  287 DSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +S++R    +V   NI A+  + D++++ LGP    KML+D +G I +T DG  +L E+ + +P A  + + +  QD+  GDGTTSV +L GE+L  AE +I +  HP++I   +N A  +A+  LD      +  DR  +L + K+ + TK +S+  + +A   +DA  T+
Sbjct:   10 ESIQRAQALQV---NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFEV-DREVLLNVAKTSLSTKISSKVVESLAPAVVDAILTI 177          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.184e-24
Identity = 61/181 (33.70%), Postives = 109/181 (60.22%), Query Frame = 2
Query:  272 VLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQF----GDLIADLAIDATTTV 802
            ++VLK+      G     +NI A  AV + ++ TLGP     +++ ++    ++NDG  IL+ LDV HPAAK+++++SR QD EVGDGTTSV +LAGE++  A+ F+++     +I + Y KA+  AV  ++++A+ I T+++++   L++ C  T  +S+      D    + +DA  ++
Sbjct:   10 IVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDI-TSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLSL 189          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 9.383e-24
Identity = 52/158 (32.91%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++R TLGP+  LKML+  +G I +T DGN +L E+ + HP A  + +++  QD   GDGTTS +++ GE+L  A+ +I +  HP +I   ++ A   A+ VLD+I +  +   R  +L + ++ + TK  ++  D++ +  +D+   +
Sbjct:   23 NICAARGLQDVLRPTLGPKGALKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASIIAKVAAAQDHVTGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFDVAKTKALEVLDEIKVQKEMK-REILLDVARTSLQTKVHAELADILTEAVVDSVLAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_YEAST (T-complex protein 1 subunit zeta OS=Saccharomyces cerevisiae GN=CCT6 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.600e-23
Identity = 58/174 (33.33%), Postives = 100/174 (57.47%), Query Frame = 2
Query:  287 DSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLD--KIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            +SL+R++  KV   N+ +++ +  ++ T LGP+  LKML+D +G I +T DG  +L E+ +  P A  +   +  QDE  GDGTT+V+ L GE+L  A  FI +  HP +I   +  A ++++  LD  KI+    +NDR  +L + +S + TK  +   +++  +  DA  +V
Sbjct:   11 ESLRRDAALKV---NVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSV 181          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.730e-23
Identity = 51/155 (32.90%), Postives = 88/155 (56.77%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAM-AIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            NI A K + ++++T LGPR  LKML+   G I +T DG  +L E+ + HP A  +   +  QD+  GDGTT+ ++  GE+L  +E ++ +N HP +I   +  A +  +A L++    + DT DR  ++ + K+ + TK  +   D + +  +DA
Sbjct:   23 NISAGKGLQNVLKTNLGPRGTLKMLVGGGGDIKLTKDGKVLLHEMQIQHPTAALIARTATAQDDITGDGTTTNVITIGELLKQSERYLQENIHPRIIAEGFELAKDRCLAFLEEFKQTSQDTLDRELLISIAKTSLRTKLPADLADQLTEQVVDA 177          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_SCHPO (Probable T-complex protein 1 subunit beta OS=Schizosaccharomyces pombe GN=cct2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.565e-23
Identity = 66/181 (36.46%), Postives = 106/181 (58.56%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLL-DASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND-----RATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            +P  +  +S  +E G     ++   + AV D++++TLGP+ M K+L  ++SG IVVTNDG  IL+ + + + AAK ++ +S+ QD+EVGDGTTSV V A E+L  AE  ++   HP VI   Y  A + A+  L   A +ID +      R+ +  + ++ + +K  SQ  +  A LA+DA
Sbjct:    4 NPHQIFNESGIQERGENARLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALR--ASSIDNSSDPAKFRSDLENIARTTLSSKILSQNKNHFAQLAVDA 182          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPZ_PONAB8.486e-2531.65T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPZ_MOUSE8.486e-2531.65T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPZ_HUMAN8.486e-2531.65T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]
TCPZ_BOVIN8.486e-2531.65T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPZ_SCHPO4.212e-2433.72T-complex protein 1 subunit zeta OS=Schizosaccharo... [more]
TCPH_YEAST7.184e-2433.70T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPW_MOUSE9.383e-2432.91T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPZ_YEAST1.600e-2333.33T-complex protein 1 subunit zeta OS=Saccharomyces ... [more]
TCPZ_DICDI2.730e-2332.90T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPB_SCHPO3.565e-2336.46Probable T-complex protein 1 subunit beta OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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