DY305487

Overview
NameDY305487
Unique NameDY305487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1254
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 109.383 bits (272), Expect = 4.657e-23
Identity = 50/158 (31.65%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML   +G I +T DGN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP +I   +  A   A+ VL+++ +  +   R  +L + ++ + TK  ++  D++ ++ +D+   V
Sbjct:   23 NICAARGLQDVLRTNLGPKGTMKMLASGAGDIKLTKDGNVLLDEMQIQHPTASLIAKVATAQDDVTGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEAAKIKALEVLEEVKVTKEMK-RKILLDVARTSLQTKVHAELADVLTEVVVDSVLAV 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.355e-22
Identity = 66/178 (37.08%), Postives = 101/178 (56.74%), Query Frame = 2
Query:  272 VLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGI-VVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKN-YHPTVICRAYNKALEDAVAVLDKIAMAID---TNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            V +  D +  E       +    + AV D++++TLGP+ M K+L  AS    +VTNDG  IL+ + + +PAAK ++ +S+ QD+EVGDGTTSV VL+ E+L  AE+ ID++  HP  I   Y  A   A+  L K A+      T  R  ++ + K+ + +K  SQ  D  A+LA +A
Sbjct:    3 VQIFGDQVTEERAENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFREDLIHIAKTTLSSKILSQDKDHFAELATNA 180          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.769e-22
Identity = 62/182 (34.07%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND-----RATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            +PV + K     E        +   + A+ D++++TLGP+ M K+LL +     ++VTNDG  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L  ++ A+D        R  ++ +  + + +K  +   D    LA++A
Sbjct:    7 APVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 107.457 bits (267), Expect = 1.769e-22
Identity = 62/182 (34.07%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND-----RATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            +PV + K     E        +   + A+ D++++TLGP+ M K+LL +     ++VTNDG  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L  ++ A+D        R  ++ +  + + +K  +   D    LA++A
Sbjct:    7 APVNIFKAGADEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.769e-22
Identity = 61/180 (33.89%), Postives = 101/180 (56.11%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTND---RATMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            +PV + K     E       ++   + A+ D++++TLGP+ M K+LL +     ++VTNDG  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L   A+   +++   R  ++ +  + + +K  +   D    LA++A
Sbjct:    7 APVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 3.018e-22
Identity = 49/158 (31.01%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            NI A++ + D++RT LGP+  +KML+  +G + +T DGN +L E+ + HP A  + +++  QD+  GDGTTS +++ GE+L  A+ +I +  HP +I   +  A   A+ VL+++ +  +   R   L + ++ + TK   Q  D++ +  +D+   +
Sbjct:   23 NICAARGLQDVLRTNLGPKGTMKMLVSGAGDVKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIIAEGFEIAKIKALEVLEQVKIKKEMK-REIHLDVARTSLQTKVHPQLADVLTEAVVDSVLAI 179          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_MOUSE (T-complex protein 1 subunit beta OS=Mus musculus GN=Cct2 PE=1 SV=4)

HSP 1 Score: 106.301 bits (264), Expect = 3.942e-22
Identity = 63/182 (34.62%), Postives = 103/182 (56.59%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAID-TNDRA----TMLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            +PV + K     E       ++   + A+ D++++TLGP+ M K+LL +     ++VTNDG  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L  ++ A+D  +D A     ++ +  + + +K  +   D    LA++A
Sbjct:    7 APVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDAALMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIISGWREATKAAREAL--LSSAVDHGSDEARFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 6.724e-22
Identity = 61/182 (33.52%), Postives = 100/182 (54.95%), Query Frame = 2
Query:  266 SPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDAS--GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRAT-----MLGLVKSCIGTKFTSQFGDLIADLAIDA 790
            +PV + K     E       ++   + A+ D++++TLGP+ M K+LL +     ++VTNDG  IL+ + V +PAAK ++++SR QD+EVGDGTTSV VLA E+L  AE  I K  HP  I   + +A + A   L  ++ A+D           ++ +  + + +K  +   D    LA++A
Sbjct:    7 APVNIFKAGADEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAAREAL--LSSAVDHGSDEVKFWQDLMNIAGTTLSSKLLTHHKDHFTKLAVEA 186          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPZ_CAEEL (T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.956e-21
Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  329 NIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVAHPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTVGVD 811
            NI  ++ + D++R+ LGP+  LKML+  +G I +T DGN +L E+ + HP A  + + S  QD+  GDGTTS ++L GE+L  AE  + +  HP ++   +  A    + +L+K        +R  ++ + ++ + TK   +  D I +  +DA   +  D
Sbjct:   23 NISGARGLQDVMRSNLGPKGTLKMLVSGAGDIKLTKDGNVLLHEMAIQHPTASMIAKASTAQDDVTGDGTTSTVLLIGELLKQAESLVLEGLHPRIVTEGFEWANTKTLELLEKFKKEAPV-ERDLLVEVCRTALRTKLHQKLADHITECVVDAVLAIRRD 182          
BLAST of DY305487 vs. ExPASy Swiss-Prot
Match: TCPE_ENCCU (T-complex protein 1 subunit epsilon OS=Encephalitozoon cuniculi GN=CCT5 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.956e-21
Identity = 64/188 (34.04%), Postives = 106/188 (56.38%), Query Frame = 2
Query:  242 LLLDTIMHSPVLVLKDSLKRESGTKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDVA-HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEEFIDKNYHPTVICRAYNKALEDAVAVLDKIAMAIDTNDRATMLGLVKSCIGTKFTSQFGDLIADLAIDATTTV 802
            LL D +  +  +  +D   R  G +   ANI   +++A  + T+LGP  M K+L      IVVTNDG  IL+E+++  +P ++ +++LS +QDEE+GDGTTSV+VLA  +L  A+  + +  HP  I   +   L  AV  L +I+  I ++ + TM+   K+ +G+K   +  +  A++  DA   V
Sbjct:    4 LLTDELGQAFQITDEDKGCRIKGQQCILANIGVVRSIATFLSTSLGPTGMDKILQSKDEDIVVTNDGATILKEMEMTENPISRLIVQLSESQDEEIGDGTTSVVVLASALLDQAQALLGQGVHPIKISEGFEVGLGHAVEHLSEISEEI-SDLKETMMKAAKTSLGSKIVYKSLERFAEICTDAVLMV 190          
The following BLAST results are available for this feature:
BLAST of DY305487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
TCPW_HUMAN4.657e-2331.65T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPB_YEAST1.355e-2237.08T-complex protein 1 subunit beta OS=Saccharomyces ... [more]
TCPB_MACFA1.769e-2234.07T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN1.769e-2234.07T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_BOVIN1.769e-2233.89T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPW_BOVIN3.018e-2231.01T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]
TCPB_MOUSE3.942e-2234.62T-complex protein 1 subunit beta OS=Mus musculus G... [more]
TCPB_RAT6.724e-2233.52T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPZ_CAEEL1.956e-2131.06T-complex protein 1 subunit zeta OS=Caenorhabditis... [more]
TCPE_ENCCU1.956e-2134.04T-complex protein 1 subunit epsilon OS=Encephalito... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305487 ID=DY305487; Name=DY305487; organism=Citrus sinensis; type=EST; length=1254bp
GAAGCCGTCCGCGTTTCCAACCCGGATTTAAGGTCTATTGCTGATAATAA
AGGGTTTTAAAGAGCATATTTGGTACAAAACATTTAAGAAGAAAACGGAG
CCAACGAGGAGGGTTCGAGGAATTTCTTTCAACAACAGCAAAGCTAAACA
GTCTCACTTCACTTCACTTTCACTTTGAGAGAAAAAGATCCCTGAGTTTA
GTTTTGTAGAGTTGAGTTGGTATCAGTAGTTAGGGTTTTATCTATTACTT
GATACAATCATGCACTCTCCAGTTCTCGTTCTCAAGGATTCCTTGAAGCG
TGAATCCGGAACCAAGGTTCACCATGCCAATATCCAGGCTTCCAAGGCTG
TTGCTGATATCATTCGTACAACATTGGGTCCCCGGTCCATGTTAAAGATG
CTACTTGATGCTAGCGGAGGGATTGTAGTAACTAATGATGGAAATGCTAT
TCTTCGTGAGCTTGATGTTGCACATCCAGCAGCTAAGTCAATGATTGAGT
TAAGTCGAACTCAAGATGAAGAAGTAGGGGATGGAACAACATCTGTCATT
GTGCTAGCTGGCGAGATGCTTCATGTTGCGGAAGAGTTCATTGACAAGAA
TTATCATCCTACAGTCATCTGCCGAGCTTACAATAAGGCTTTGGAGGATG
CTGTTGCTGTGCTTGATAAAATTGCAATGGCCATTGATACAAATGATCGT
GCAACAATGTTGGGCCTGGTCAAGAGTTGCATTGGAACTAAGTTCACAAG
CCAATTTGGGGATCTGATAGCTGATCTTGCAATTGATGCCACCACTACTG
TTGGTGTTGACCTTGGCCAAGGGTTGCGAGAGGTGGATATTAAGAAGTGC
ATTAAAGTTGGAAAAGGTTCCTGGTGGCCCGTTGGAAAATTCTAAGGGTT
CCTAAAGGATTTATGTTCCACAAAAAAGTTTTTTGCCCCTGGAAAAATGG
GAAAAAAAAATTGTCAACCCCCGGTTTTACCCTCTCTTGATTCCCCCCCT
TTATATAAAAAAAAGGAAAAAAATCAACACATTGGCCGATTTTGGTTTAA
AGAGAAAAACCTGGGGGAATCCTGTTTTAAAATGGGAAAAAAAAAAATCC
TTTGAAAACCCCTCTCACTTCCAAAATTCCGAATTTTTAAAACACACATT
TTGGTAATTTTACCAAAAAAGGGGGCTCAATTTTTGTTTTTTGTAGGCCC
AATTTCCTAAACCCCAAGCGGCGGCCCCTTATAGTTGCATTATTTATGAA
AGGG
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