DY305485

Overview
NameDY305485
Unique NameDY305485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1144
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_RHIME (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhizobium meliloti GN=fabF PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 4.116e-31
Identity = 84/200 (42.00%), Postives = 110/200 (55.00%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNND-PTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNRG-LRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNV-LVGPKKERLEVKAAL 594
            I L GF AC+ALS ++ND P KASRP+D +RDGFVM             HA+ RGAKIYAE  G   + DA+H+T P  DG G   C++ AL  +GV+  D++YINAH TST A D  E  A+    G +   + ++STKS IGHLL               R     P +NL+NP   V+T + LV     + E+  AL
Sbjct:  204 ISLAGFAACKALSTQHNDNPEKASRPYDADRDGFVMGEGAGIVVLEELEHARARGAKIYAEVIGYGLSGDAFHITAPSEDGEGAYRCMQMALKRAGVTAADIDYINAHGTSTMA-DTIELGAVERLVGDSASRISMSSTKSAIGHLLGAAGAVEAIFSALAIRDNIAPPTLNLDNPS--VETKIDLVPHVARKREINVAL 400          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: KASM_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial OS=Arabidopsis thaliana GN=KAS PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.014e-29
Identity = 74/202 (36.63%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    1 AIGLGGFVACRALSQR-NNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR---GLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVLVGPKKERLEVKAAL 594
            A+ + GF   RALS + N+ P +ASRP+D +RDGFV+             HAK+RGAKIYAE  G   + DA+H+T+P  DG G +L + +AL  SG+    ++Y+NAHATSTP GD  E +A+   F ++     L  +STK   GHLL                 G     +N++NPD + D   +     +++ V+ A+
Sbjct:  242 ALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAPMTLNVKNPDPIFDKRFMPLTTSKKMLVRTAM 443          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_BACSU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis GN=fabF PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.912e-28
Identity = 76/180 (42.22%), Postives = 97/180 (53.89%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQN-RGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVD 540
            +   GF A +ALS  N DP  ASRP+D NRDGFVM             HA  RGAKIY E  G   T DAYH+T P  DG G    +++A+  +G++ E+++YINAH TST   D  E  A+   FG++   L V+STKSM GHLL               + G I P IN++ PD   D
Sbjct:  198 MSFAGFSANKALST-NPDPKTASRPFDKNRDGFVMGEGAGIIVLEELEHALARGAKIYGEIVGYGSTGDAYHITAPAQDGEGGARAMQEAIKDAGIAPEEIDYINAHGTSTYYNDKYETMAIKTVFGEHAHKLAVSSTKSMTGHLLGAAGGIEAIFSILAIKEGVIPPTINIQTPDEECD 376          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_STAAU (3-oxoacyl-[acyl-carrier-protein] synthase 2 (Fragment) OS=Staphylococcus aureus GN=fabF PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.114e-27
Identity = 72/184 (39.13%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVL 552
            + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+G G    ++ A+  +G+  +DV Y+NAH TSTP GD+ E +A+ + FG+  + L+V+STKSM GHLL               +   I P I+   PD   D +++
Sbjct:  192 MAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKIAPTIHAVTPDPECDLDIV 374          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_STAAW (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MW2) GN=fabF PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.761e-27
Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVL 552
            + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+G G    ++ A+  +G+  +DV Y+NAH TSTP GD+ E +A+ + FG+  + L+V+STKSM GHLL               +   + P I+   PD   D +++
Sbjct:  199 MAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIV 381          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_STAAS (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MSSA476) GN=fabF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.761e-27
Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVL 552
            + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+G G    ++ A+  +G+  +DV Y+NAH TSTP GD+ E +A+ + FG+  + L+V+STKSM GHLL               +   + P I+   PD   D +++
Sbjct:  199 MAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIV 381          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_STAAR (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain MRSA252) GN=fabF PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.761e-27
Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVL 552
            + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+G G    ++ A+  +G+  +DV Y+NAH TSTP GD+ E +A+ + FG+  + L+V+STKSM GHLL               +   + P I+   PD   D +++
Sbjct:  199 MAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIV 381          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_STAAN (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain N315) GN=fabF PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.761e-27
Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVL 552
            + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+G G    ++ A+  +G+  +DV Y+NAH TSTP GD+ E +A+ + FG+  + L+V+STKSM GHLL               +   + P I+   PD   D +++
Sbjct:  199 MAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIV 381          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_STAAM (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=fabF PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.761e-27
Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVL 552
            + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+G G    ++ A+  +G+  +DV Y+NAH TSTP GD+ E +A+ + FG+  + L+V+STKSM GHLL               +   + P I+   PD   D +++
Sbjct:  199 MAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIV 381          
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: FABF_STAAC (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Staphylococcus aureus (strain COL) GN=fabF PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.761e-27
Identity = 71/184 (38.59%), Postives = 99/184 (53.80%), Query Frame = 1
Query:    4 IGLGGFVACRALSQRNNDPTKASRPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQ-NRGLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVL 552
            + + GF A RALS  N+D   A RP+   RDGFVM              A+ RGA IYAE  G   T DAYH+T P P+G G    ++ A+  +G+  +DV Y+NAH TSTP GD+ E +A+ + FG+  + L+V+STKSM GHLL               +   + P I+   PD   D +++
Sbjct:  199 MAIAGFSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNTFGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDIV 381          
The following BLAST results are available for this feature:
BLAST of DY305485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
FABF_RHIME4.116e-3142.003-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Rhi... [more]
KASM_ARATH1.014e-2936.633-oxoacyl-[acyl-carrier-protein] synthase, mitocho... [more]
FABF_BACSU1.912e-2842.223-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bac... [more]
FABF_STAAU2.114e-2739.133-oxoacyl-[acyl-carrier-protein] synthase 2 (Fragm... [more]
FABF_STAAW2.761e-2738.593-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAS2.761e-2738.593-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAR2.761e-2738.593-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAN2.761e-2738.593-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAM2.761e-2738.593-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]
FABF_STAAC2.761e-2738.593-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Sta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM1AF10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305485 ID=DY305485; Name=DY305485; organism=Citrus sinensis; type=EST; length=1144bp
GCCATTGGGTTGGGAGGTTTTGTGGCATGCAGAGCACTTTCACAGAGGAA
CAACGATCCTACCAAAGCTTCTCGCCCTTGGGATATTAATCGTGATGGAT
TTGTCATGGGGGAAGGAGCTGGCGTTCTGCTTTTAGAAGAATTAGAGCAT
GCTAAGAAAAGAGGTGCAAAAATCTATGCAGAATTTCGTGGTGGAAGCTT
CACCTCTGATGCTTATCATATGACTGAACCACACCCTGATGGGGTTGGTG
TAATTCTCTGCATAGAGAAGGCATTAGCACATTCTGGGGTCTCCAGGGAA
GATGTAAATTATATAAATGCACATGCAACATCCACACCAGCTGGAGACAT
TAAAGAATATCAAGCTCTTATTCATTGTTTTGGCCAGAATCGTGGGTTAA
GGGTAAACTCAACAAAATCTATGATTGGTCACTTACTGGGAGCAGCTGGA
GCTGTAGAAGCCATTGCAGTTGTGCAGGCAATAAGGACAGGGTGGATTCA
TCCAAATATCAACCTGGAAAACCCAGATGGAGTAGTGGACACGAATGTGC
TTGTGGGCCCAAAGAAAGAGAGACTAGAGGTTAAGGCAGCATTGTCTAAC
TCATTTGGATTTGGCGGCCACAATTCATCAATCATTTTTTCTCCATACAA
GTAAATTAGTTGTGGTGTTACCACTCCTAACTGTTGCTGTATGATGCTTA
AGAGTACTAAGACAAATTTCATGATATATGATGTCCATTCCAATGTGACA
TGTTATGCTTCTTTGGTTGGACAGTAGATGGCATAAAACTGATGAACAGC
TGGAGACTTTGGAAAATGGCACTAGAAAATTTTAAGAAGTGATTATTGTT
GAATTTTATAGCCCTCNNCCTCTTNNTNCNTTTTCTTTTTTTCCTTNTTT
TTTTCCCCCCCTNCCTTTCCTTTTTTCTTCCCTTCCCCCTTTTTCCCTTC
CCCCTCTTCCCTTTTTTTTTTTTCCTCTTTCTTTTTTTNCTTCCCTTTCC
TCCTCCCCTTTTTTCCCCCCTTTTTTTTTTTTTTNNTTTTTTTTCCCCCC
CCCTTTTTCCCTTNCCTTTTCTTTTTTTTTTTCCCCCCCCNCCCCCCNCT
NTTTTTTTTCCCCTCCCTNNNNNNNNNNNNNNNTNNTNTTNCCC
back to top