DY305485

Overview
NameDY305485
Unique NameDY305485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1144
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: NODE_RHILT (Nodulation protein E OS=Rhizobium leguminosarum bv. trifolii GN=nodE PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.509e-12
Identity = 51/168 (30.36%), Postives = 73/168 (43.45%), Query Frame = 1 
Query:   73 RPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYHMTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR-GLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVVDTNVLVGPKKER 573
            RP+  +R G V+             HA  RGA + AE  G   + DAY +  P  +G    +     LA + ++ +DV+Y+NAH T T A D  E  A+   FG +   + V+STKSM  H L               + G I P  N   PD   D +V     +E+
Sbjct:  213 RPFSADRKGVVLGEGAGMAVLESYEHAAARGATMLAEVAGIGLSGDAYDIVMPSIEGPEAAM--RSCLADAELNPDDVDYLNAHGTGTVANDEMETAAIKRVFGDHAFQMSVSSTKSMHAHCLGAASALEMIACVMAIQEGVIPPTANYREPDPQCDLDVTPNVPREQ 378
[Close]
BLAST of DY305485 vs. ExPASy Swiss-Prot
Match: PKS16_DICDI (Probable polyketide synthase 16 OS=Dictyostelium discoideum GN=pks16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.124e-11
Identity = 54/172 (31.40%), Postives = 74/172 (43.02%), Query Frame = 1 
Query:   73 RPWDINRDGFVMXXXXXXXXXXXXXHAKKRGAKIYAEFRGGSFTSDAYH----MTEPHPDGVGVILCIEKALAHSGVSREDVNYINAHATSTPAGDIKEYQALIHCFGQNR----GLRVNSTKSMIGHLLXXXXXXXXXXXXXXXRTGWIHPNINLENPDGVV---DTNVLV 555
            R +D   DG++               A K G +IY   +GGS   D Y+    +T+P     G    IE AL  SGV+  D+ YI AH T TP GD  E +A+   F  N      L + S KS IGHL                +   + PNI+ E P+ ++   D N+ V
Sbjct:  231 RSFDAGADGYIRSEGGGVCILKKYSDAIKDGDRIYCVIKGGSSNVDGYNAKTNITQPSMKAQGEN--IEIALKKSGVNPSDIYYIEAHGTGTPVGDPIEIEAISRIFKDNHTPDAPLYIGSVKSNIGHLESAAGIASLIKVALSLKNRSLVPNIHFEKPNPLIKFEDWNIRV 400
The following BLAST results are available for this feature:
BLAST of DY305485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
NODE_RHILT2.509e-1230.36Nodulation protein E OS=Rhizobium leguminosarum bv... [more]
PKS16_DICDI2.124e-1131.40Probable polyketide synthase 16 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1AF10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305485 ID=DY305485; Name=DY305485; organism=Citrus sinensis; type=EST; length=1144bp
GCCATTGGGTTGGGAGGTTTTGTGGCATGCAGAGCACTTTCACAGAGGAA
CAACGATCCTACCAAAGCTTCTCGCCCTTGGGATATTAATCGTGATGGAT
TTGTCATGGGGGAAGGAGCTGGCGTTCTGCTTTTAGAAGAATTAGAGCAT
GCTAAGAAAAGAGGTGCAAAAATCTATGCAGAATTTCGTGGTGGAAGCTT
CACCTCTGATGCTTATCATATGACTGAACCACACCCTGATGGGGTTGGTG
TAATTCTCTGCATAGAGAAGGCATTAGCACATTCTGGGGTCTCCAGGGAA
GATGTAAATTATATAAATGCACATGCAACATCCACACCAGCTGGAGACAT
TAAAGAATATCAAGCTCTTATTCATTGTTTTGGCCAGAATCGTGGGTTAA
GGGTAAACTCAACAAAATCTATGATTGGTCACTTACTGGGAGCAGCTGGA
GCTGTAGAAGCCATTGCAGTTGTGCAGGCAATAAGGACAGGGTGGATTCA
TCCAAATATCAACCTGGAAAACCCAGATGGAGTAGTGGACACGAATGTGC
TTGTGGGCCCAAAGAAAGAGAGACTAGAGGTTAAGGCAGCATTGTCTAAC
TCATTTGGATTTGGCGGCCACAATTCATCAATCATTTTTTCTCCATACAA
GTAAATTAGTTGTGGTGTTACCACTCCTAACTGTTGCTGTATGATGCTTA
AGAGTACTAAGACAAATTTCATGATATATGATGTCCATTCCAATGTGACA
TGTTATGCTTCTTTGGTTGGACAGTAGATGGCATAAAACTGATGAACAGC
TGGAGACTTTGGAAAATGGCACTAGAAAATTTTAAGAAGTGATTATTGTT
GAATTTTATAGCCCTCNNCCTCTTNNTNCNTTTTCTTTTTTTCCTTNTTT
TTTTCCCCCCCTNCCTTTCCTTTTTTCTTCCCTTCCCCCTTTTTCCCTTC
CCCCTCTTCCCTTTTTTTTTTTTCCTCTTTCTTTTTTTNCTTCCCTTTCC
TCCTCCCCTTTTTTCCCCCCTTTTTTTTTTTTTTNNTTTTTTTTCCCCCC
CCCTTTTTCCCTTNCCTTTTCTTTTTTTTTTTCCCCCCCCNCCCCCCNCT
NTTTTTTTTCCCCTCCCTNNNNNNNNNNNNNNNTNNTNTTNCCC
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